Create Labelimage from ij roiset

2d_spots_in_fibers.py

@@ -757,7 +757,12 @@ processing_channels = processing_channels_string.split(",")
 quality_thresholds_string = quality_thresholds_string.replace(" ", "")
 quality_thresholds = quality_thresholds_string.split(",")
 
-# TODO: Get the fiber segmentation and convert to labelimage
+# Get the fiber segmentation and convert to labelimage
+canvas = create_empty_image(32, image_width, image_height)
+load_rois_from_zip(fiber_segmentation_roiset)
+fiber_label_imp = convert_rois_to_labelimage(canvas)
+canvas.close()
+fiber_label_imp.show()
 
 # threshold DAPI channel and convert to binary
 dapi_channel = BFopen_image(path_to_image, dapi_channel_number, series_number, z_slice_number=dapi_channel_zslice)