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  • cellpose_rewrite
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  • fix-path-handling
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  • myosoft-imcf-2.2.0
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Created with Raphaël 2.2.016Apr151413Feb1214Jan811Dec3Feb19Apr7Mar10Nov19Nov1865313Oct1298Remove GUI message about ROI expansionmastermasterAdd spots_in_fibers description to READMERemove unnecessary function, its use, import and printsMerge branch 'spots-in-fibers' into 'master'Pass RoiManager to functionsRemove unused lineRemove RoiManager import, get from script parameter instead.Remove unused function, its execution and associated importMerge branch 'spots-in-fibers' of https://git.scicore.unibas.ch/imcf/myosoft-imcf into spots-in-fibersAdapt to new functionAdapt to new functionRemove unused function and importsRemove unused function and importsAdd TODORemove unnecessary semicolonRun Garbage Collector at the end of the scriptAdd missing spot diameter parameter to functionset default spot diameter to 0.3Change spot label ID painting methodFix syntax errorRemove unused functions and importsAdd minimun spot diameter as parameterAdapt to api change in trackmatePrecises commentDo not show intermediate imageRemove sum projection as data is a 2D MIPDon't use z-slice option, input is a MIPCreate Labelimage from ij roisetGet path to ij roiset from GUIAdd function to convert ijrois to labelimageInitial commitMerge branch 'dev'myosoft-imcf-2.…myosoft-imcf-2.2.0Fix resizing threshold and add logdevdevMerge branch 'dev'myosoft-imcf-2.…myosoft-imcf-2.1.0Add rescaling if image is too big for Cellpose even on NabooAdd compatibility with container files and formattingMerge branch 'dev'myosoft-imcf-2.…myosoft-imcf-2.0.1Improve speed by hiding the image during processingRefactor fiber typing to use loopCorrect typo and clarify python environment