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imcf
myosoft-imcf
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2ef8b8ccca30969df2239c72a57e409a691e7435
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Branches
4
cellpose_rewrite
dev
fix-path-handling
master
default
protected
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4
myosoft-imcf-2.2.0
myosoft-imcf-2.1.0
myosoft-imcf-2.0.1
myosoft-imcf-1.0.0
8 results
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Created with Raphaël 2.2.0
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Merge branch 'dev'
myosoft-imcf-2.…
myosoft-imcf-2.2.0 master
Fix resizing threshold and add log
dev
dev
Merge branch 'dev'
myosoft-imcf-2.…
myosoft-imcf-2.1.0
Add rescaling if image is too big for Cellpose even on Naboo
Add compatibility with container files and formatting
Merge branch 'dev'
myosoft-imcf-2.…
myosoft-imcf-2.0.1
Improve speed by hiding the image during processing
Refactor fiber typing to use loop
Correct typo and clarify python environment
Docstring formatting and refactoring
Merge branch 'cellpose_rewrite'
Format code
cellpose_rewrite
cellpose_rewrite
Use __main__
Add option to do batch
Remove some filtering measurements and change order of input and imports
Add background correction method
Update docstrings
Update README adding links and replacing Weka by Cellpose
Re add preprocessing
WIP
fix bug that expected a certain channel sequence
Add Zenodo DOI badge
Markdown formatting and conventions
add classifiers .model files
myosoft-imcf-1.…
myosoft-imcf-1.0.0
Merge branch 'fix-path-handling' into 'master'
more robust file naming and path handling
fix-path-handling
fix-path-handling
updates readme including informaion on script 2a
feature: find_nuclei function uses much more sensitive threshold method
fix: fixes a bug when fetching the resultstable
Add LICENSE
fix: fixed typo in folder naming
renamed files according to execution sequence
initial commit
feature: save selected rois, reports manual threshold, removes unnecessary function
fix: fixes a bug, now reports manual threshold
a ziped version of the Classifiers is not needed
each script writes its result into its own specific folder
rename: renames files to indicate order of execution
feature: accepts any roi-set and only searches for central nuclei
fix: removes unused function
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