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Created with Raphaël 2.2.013Feb1214Jan811Dec3Feb19Apr7Mar10Nov19Nov1865313Oct1298Merge branch 'dev'myosoft-imcf-2.…myosoft-imcf-2.2.0 masterFix resizing threshold and add logdevdevMerge branch 'dev'myosoft-imcf-2.…myosoft-imcf-2.1.0Add rescaling if image is too big for Cellpose even on NabooAdd compatibility with container files and formattingMerge branch 'dev'myosoft-imcf-2.…myosoft-imcf-2.0.1Improve speed by hiding the image during processingRefactor fiber typing to use loopCorrect typo and clarify python environmentDocstring formatting and refactoringMerge branch 'cellpose_rewrite'Format codecellpose_rewritecellpose_rewriteUse __main__Add option to do batchRemove some filtering measurements and change order of input and importsAdd background correction methodUpdate docstringsUpdate README adding links and replacing Weka by CellposeRe add preprocessingWIPfix bug that expected a certain channel sequenceAdd Zenodo DOI badgeMarkdown formatting and conventionsadd classifiers .model filesmyosoft-imcf-1.…myosoft-imcf-1.0.0Merge branch 'fix-path-handling' into 'master'more robust file naming and path handlingfix-path-handlingfix-path-handlingupdates readme including informaion on script 2afeature: find_nuclei function uses much more sensitive threshold methodfix: fixes a bug when fetching the resultstableAdd LICENSEfix: fixed typo in folder namingrenamed files according to execution sequenceinitial commitfeature: save selected rois, reports manual threshold, removes unnecessary functionfix: fixes a bug, now reports manual thresholda ziped version of the Classifiers is not neededeach script writes its result into its own specific folderrename: renames files to indicate order of executionfeature: accepts any roi-set and only searches for central nucleifix: removes unused function