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OvCa research
drugsens
Commits
7cc065ce
Commit
7cc065ce
authored
1 year ago
by
Flavio Lombardo
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Testing new functions locally
parent
47b36959
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man/string_parsing.Rd
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man/string_parsing.Rd
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tests/testthat/test_cases.R
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tests/testthat/test_cases.R
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man/string_parsing.Rd
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/parsers.R
\name{string_parsing}
\alias{string_parsing}
\title{Main parsing function}
\usage{
string_parsing(.data)
}
\arguments{
\item{.data}{dataframe with parsed metadata}
}
\value{
A \code{dataframe}/\code{tibble}.
}
\description{
This function will parse the data from the Image name and will return the metadata there contained
The metadata will be then associated to the count file as well
}
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},
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"stats",
"utils"
],
"Hash": "9fe98599ca456d6552421db0d6772d8f"
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"boot": {
"Package": "boot",
"Version": "1.3-28",
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"utils"
],
"Hash": "3f038e5ac7f41d4ac41ce658c85e3042"
},
"colorspace": {
"Package": "colorspace",
"Version": "2.1-0",
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"rlang",
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"hms",
"lifecycle",
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"tibble",
"tzdb",
"utils",
"vroom"
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"Package": "rematch2",
"Version": "2.1.2",
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],
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"utf8": {
"Package": "utf8",
"Version": "1.2.4",
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"rlang",
"stats",
"tibble",
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"waldo": {
"Package": "waldo",
"Version": "0.5.2",
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tests/testthat/test_cases.R
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@@ -45,4 +45,22 @@ test_that("Check that the config.txt is made and can be read", {
expect_true
(
exists
(
"list_of_relabeling"
))
})
# WIP add for the regex in preprocessing
# WIP add for the regex in processing the data
# test_that("Check that parsig does work", {
#
# Image1 <- "B516_Ascites_2023-11-25_DOC2020-12-14_CarboplatinPaclitaxel_100_uM_10_nM_Ecad_cCasp3_(series 01).tif"
# Image2 <- "A8759_Spleen_2020.11.10_DOC2001.10.05_compoundX34542_1000_uM_EpCAM_Ecad_cCasp3_(series 01).tif"
# Image3 <- "A8759_Spleen_2020.11.10_DOC2001.10.05_compoundX34542_1000_uM_EpCAM_Ecad_cCasp3_(series 01).tif"
# Image4 <- "B38_Eye_2023.11.10_DOC2023.10.05_GentamicinePaclitaxel_100_uM_10_nM_EpCAM_Ecad_cCasp3_(series 01).tif"
#
# # make a dataframe of those images examples
# dt <- data.frame(
# Image = c(Image1, Image2, Image3, Image4),
# Example = c("Protocol", "Fake", "Fake", "Fake")
# )
#
# # run parser
# dt1 <- DRUGSENS:::string_parsing(dt)
#
# expect_true(exists("list_of_relabeling"))
# })
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