Testing new functions locally

renv.lock

@@ -133,6 +133,30 @@
       ],
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+        "methods",
+        "stats",
+        "utils"
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@@ -241,6 +265,16 @@
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@@ -577,6 +611,20 @@
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+        "methods",
+        "pkgconfig",
+        "rlang",
+        "vctrs"
+      ],
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@@ -872,6 +920,16 @@
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@@ -885,6 +943,20 @@
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@@ -929,6 +1001,29 @@
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+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "R6",
+        "cli",
+        "clipr",
+        "cpp11",
+        "crayon",
+        "hms",
+        "lifecycle",
+        "methods",
+        "rlang",
+        "tibble",
+        "tzdb",
+        "utils",
+        "vroom"
+      ],
+      "Hash": "9de96463d2117f6ac49980577939dfb3"
+    },
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@@ -1172,6 +1267,17 @@
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@@ -1206,6 +1312,32 @@
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+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "bit64",
+        "cli",
+        "cpp11",
+        "crayon",
+        "glue",
+        "hms",
+        "lifecycle",
+        "methods",
+        "progress",
+        "rlang",
+        "stats",
+        "tibble",
+        "tidyselect",
+        "tzdb",
+        "vctrs",
+        "withr"
+      ],
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     "waldo": {
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tests/testthat/test_cases.R

@@ -45,4 +45,22 @@ test_that("Check that the config.txt is made and can be read", {
   expect_true(exists("list_of_relabeling"))
 })
 
-# WIP add for the regex in preprocessing
+# WIP add for the regex in processing the data
+# test_that("Check that parsig does work", {
+#
+#   Image1 <- "B516_Ascites_2023-11-25_DOC2020-12-14_CarboplatinPaclitaxel_100_uM_10_nM_Ecad_cCasp3_(series 01).tif"
+#   Image2 <- "A8759_Spleen_2020.11.10_DOC2001.10.05_compoundX34542_1000_uM_EpCAM_Ecad_cCasp3_(series 01).tif"
+#   Image3 <- "A8759_Spleen_2020.11.10_DOC2001.10.05_compoundX34542_1000_uM_EpCAM_Ecad_cCasp3_(series 01).tif"
+#   Image4 <- "B38_Eye_2023.11.10_DOC2023.10.05_GentamicinePaclitaxel_100_uM_10_nM_EpCAM_Ecad_cCasp3_(series 01).tif"
+#
+#   # make a dataframe of those images examples
+#   dt <- data.frame(
+#     Image = c(Image1, Image2, Image3, Image4),
+#     Example = c("Protocol", "Fake", "Fake", "Fake")
+#   )
+#
+#   # run parser
+#   dt1 <- DRUGSENS:::string_parsing(dt)
+#
+#   expect_true(exists("list_of_relabeling"))
+# })