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Merge branch 'develop' into experimental
Conflicts: loop/pymod/export_backbone.cc scoring/pymod/wrap_scoring.cc scoring/src/CMakeLists.txt
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- CMakeLists.txt 1 addition, 1 deletionCMakeLists.txt
- core/src/dynamic_spatial_organizer.hh 1 addition, 1 deletioncore/src/dynamic_spatial_organizer.hh
- doc/contributing.rst 1 addition, 1 deletiondoc/contributing.rst
- doc/portableIO.rst 4 additions, 0 deletionsdoc/portableIO.rst
- doc/tests/CMakeLists.txt 1 addition, 0 deletionsdoc/tests/CMakeLists.txt
- doc/tests/scripts/loop_all_atom.py 26 additions, 0 deletionsdoc/tests/scripts/loop_all_atom.py
- doc/tests/test_doctests.py 10 additions, 0 deletionsdoc/tests/test_doctests.py
- extras/data_generation/all_atom_scorer/create_default_aa_scorer.py 67 additions, 0 deletions...ta_generation/all_atom_scorer/create_default_aa_scorer.py
- extras/data_generation/all_atom_scorer/interaction_pot.dat 0 additions, 0 deletionsextras/data_generation/all_atom_scorer/interaction_pot.dat
- extras/data_generation/all_atom_scorer/packing_pot.dat 0 additions, 0 deletionsextras/data_generation/all_atom_scorer/packing_pot.dat
- loop/doc/CMakeLists.txt 2 additions, 1 deletionloop/doc/CMakeLists.txt
- loop/doc/all_atom.rst 486 additions, 0 deletionsloop/doc/all_atom.rst
- loop/doc/backbone.rst 3 additions, 0 deletionsloop/doc/backbone.rst
- loop/doc/index.rst 1 addition, 0 deletionsloop/doc/index.rst
- loop/pymod/CMakeLists.txt 3 additions, 0 deletionsloop/pymod/CMakeLists.txt
- loop/pymod/export_all_atom_env.cc 89 additions, 0 deletionsloop/pymod/export_all_atom_env.cc
- loop/pymod/export_all_atom_positions.cc 124 additions, 0 deletionsloop/pymod/export_all_atom_positions.cc
- loop/pymod/export_amino_acid_atoms.cc 217 additions, 0 deletionsloop/pymod/export_amino_acid_atoms.cc
- loop/pymod/export_backbone.cc 52 additions, 28 deletionsloop/pymod/export_backbone.cc
- loop/pymod/wrap_loop.cc 6 additions, 1 deletionloop/pymod/wrap_loop.cc
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