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use ost TriMatrix for distance matrices for simplicity
Speed benchmarks suggest, that there is no drop of performance compared to the previously used 2 dimensional arrays that have been manually allocated / deleted
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- core/src/cluster.cc 12 additions, 9 deletionscore/src/cluster.cc
- core/src/cluster.hh 4 additions, 3 deletionscore/src/cluster.hh
- core/src/superpose.cc 8 additions, 4 deletionscore/src/superpose.cc
- core/src/superpose.hh 2 additions, 1 deletioncore/src/superpose.hh
- modelling/src/loop_candidate.cc 7 additions, 30 deletionsmodelling/src/loop_candidate.cc
- modelling/src/rigid_blocks.cc 3 additions, 14 deletionsmodelling/src/rigid_blocks.cc
- scoring/src/constraint_constructor.cc 4 additions, 14 deletionsscoring/src/constraint_constructor.cc
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