Make optimize_subrotamers handling default.

sidechain/pymod/_reconstruct_sidechains.py

@@ -354,7 +354,7 @@ def _GetDisulfidBridges(frame_residues, cystein_indices, res_list, rotamer_libra
 
 def Reconstruct(ent, keep_sidechains=False, build_disulfids=True,
                 rotamer_model="frm", consider_ligands=True, 
-                rotamer_library=None, optimize_subrotamers = False,
+                rotamer_library=None, optimize_subrotamers=True,
                 graph_max_complexity=100000000, graph_initial_epsilon=0.02):
     '''Reconstruct sidechains for the given structure.
 
@@ -385,7 +385,7 @@ def Reconstruct(ent, keep_sidechains=False, build_disulfids=True,
                             library.
     :type rotamer_library:  :class:`BBDepRotamerLib` / :class:`RotamerLib`
 
-    :param optimize_subrotamers: Only considered when **rotamer_model** 
+    :param optimize_subrotamers: Only considered when *rotamer_model*
                                  is "frm".
                                  If set to True, the FRM solution undergoes 
                                  some postprocessing by calling