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move all operations, that should lead to a gapless model into one function
The idea is that this whole procedure can then be applied to only a part of the model by providing chain_idx and resnum ranges.
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- doc/tests/scripts/modelling_steps.py 8 additions, 20 deletionsdoc/tests/scripts/modelling_steps.py
- modelling/doc/pipeline.rst 5 additions, 8 deletionsmodelling/doc/pipeline.rst
- modelling/pymod/_closegaps.py 30 additions, 2 deletionsmodelling/pymod/_closegaps.py
- modelling/pymod/_pipeline.py 100 additions, 18 deletionsmodelling/pymod/_pipeline.py
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