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Optionally parse sequence profiles with the PM3ArgumentParser
The user provided profiles are mapped on the gapless target sequences by exact sequence match. The mapping works with an all or nothing principle. Either all target sequences must be covered by a profile or none. An error is thrown otherwise. To avoid ambiguities, the sequences of all provided profiles must be unique => in case of a homo-oligomer, one profile must be provided. If an additional profile is provided that does not match any target sequence, an error is thrown.
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- core/pymod/pm3argparse.py 100 additions, 1 deletioncore/pymod/pm3argparse.py
- core/tests/CMakeLists.txt 5 additions, 0 deletionscore/tests/CMakeLists.txt
- core/tests/data/aln_tpl/1crn.hhm 180 additions, 0 deletionscore/tests/data/aln_tpl/1crn.hhm
- core/tests/data/aln_tpl/1crn_corrupted.hhm 185 additions, 0 deletionscore/tests/data/aln_tpl/1crn_corrupted.hhm
- core/tests/data/aln_tpl/5ua4_B.fasta 4 additions, 0 deletionscore/tests/data/aln_tpl/5ua4_B.fasta
- core/tests/data/aln_tpl/5ua4_B.hhm 144 additions, 0 deletionscore/tests/data/aln_tpl/5ua4_B.hhm
- core/tests/test_pm3argparse.py 107 additions, 1 deletioncore/tests/test_pm3argparse.py
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