Updated compiled doc.

doc/html/loop/mm_system_creation.html

doc/html/loop/structure_db.html

doc/html/loop/torsion_sampler.html

doc/html/modelling/algorithms.html

doc/html/modelling/gap_handling.html

doc/html/modelling/index.html

doc/html/modelling/loop_candidates.html

doc/html/modelling/loop_closing.html

doc/html/modelling/model_checking.html

doc/html/modelling/monte_carlo.html

doc/html/modelling/pipeline.html

doc/html/modelling/sidechain_reconstruction.html

doc/html/objects.inv

doc/html/portableIO.html

doc/html/py-modindex.html

doc/html/references.html

doc/html/scoring/all_atom_scorers.html

doc/html/scoring/backbone_score_env.html

doc/html/scoring/backbone_scorers.html

doc/html/scoring/index.html