Remove old pre-defined paths

run_af2/src/run_af2/run_singularity.py

@@ -243,19 +243,6 @@ def run_af2_singularity_image(  # pylint: disable=too-many-arguments
     + "mmcif_files/",
     obsolete_pdbs_path="/scicore/data/managed/PDB/latest/data/status/"
     + "obsolete.dat",
-    # data_dir="/scicore/home/schwede/GROUP/alphafold_data/",
-    #mgnify_database_path="/scicore/data/managed/MGnify/frozen_210805T103002/"
-    #+ "mgy_clusters_2018_12.fa",
-    # uniref30_database_path="/scicore/home/schwede/GROUP/alphafold_data/"
-    # + "uniref30/UniRef30_2021_03",
-    # pdb_seqres_database_path="/scicore/home/schwede/GROUP/alphafold_data/"
-    # + "pdb_seqres/pdb_seqres.txt",
-    # uniprot_database_path="/scicore/home/schwede/GROUP/alphafold_data/uniprot/"
-    # + "uniprot.fasta",
-    # template_mmcif_dir="/scicore/home/schwede/GROUP/alphafold_data/pdb_mmcif/"
-    # + "mmcif_files/",
-    # obsolete_pdbs_path="/scicore/home/schwede/GROUP/alphafold_data/pdb_mmcif/"
-    # + "obsolete.dat",
 ):
     """Run the AlphaFold 2 Singularity image on host.