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Commit 173c5817 authored by BIOPZ-Bertoni Martino's avatar BIOPZ-Bertoni Martino
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new enviroment DSSP bin name included when locating DSSP

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modules/bindings/pymod/dssp.py
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...@@ -48,7 +48,7 @@ def _ExecuteDSSP(path, dssp_bin, temp_dir=None): ...@@ -48,7 +48,7 @@ def _ExecuteDSSP(path, dssp_bin, temp_dir=None):
# use of mktemp is a safty problem (use mkstemp and provide file handle to # use of mktemp is a safty problem (use mkstemp and provide file handle to
# subsequent process # subsequent process
temp_dssp_path=tempfile.mktemp(suffix=".out",prefix="dssp", dir=temp_dir) temp_dssp_path=tempfile.mktemp(suffix=".out",prefix="dssp", dir=temp_dir)
dssp_abs_path=settings.Locate(['dsspcmbi','dssp'], env_name='DSSP_EXECUTABLE', dssp_abs_path=settings.Locate(['dsspcmbi','dssp','mkdssp'], env_name='DSSP_EXECUTABLE',
explicit_file_name=dssp_bin) explicit_file_name=dssp_bin)
if os.path.isdir(dssp_abs_path): if os.path.isdir(dssp_abs_path):
raise RuntimeError('"%s" is a directory. Specify path to DSSP binary' % dssp_abs_path) raise RuntimeError('"%s" is a directory. Specify path to DSSP binary' % dssp_abs_path)
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