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2deac43a

Commit 2deac43a authored 6 years ago by Studer Gabriel

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database for efficient in-memory lookup of coordinates and sequences

parent c67deba1

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modules/db/CMakeLists.txt 2 additions, 1 deletion

modules/db/CMakeLists.txt
modules/db/doc/db.rst 306 additions, 0 deletions

modules/db/doc/db.rst
modules/db/pymod/CMakeLists.txt 2 additions, 1 deletion

modules/db/pymod/CMakeLists.txt
modules/db/pymod/__init__.py 1 addition, 1 deletion

modules/db/pymod/__init__.py
modules/db/pymod/export_linear_db.cc 208 additions, 0 deletions

modules/db/pymod/export_linear_db.cc
modules/db/pymod/wrap_db.cc 28 additions, 0 deletions

modules/db/pymod/wrap_db.cc
modules/db/src/CMakeLists.txt 8 additions, 1 deletion

modules/db/src/CMakeLists.txt
modules/db/src/binary_container.cc 235 additions, 0 deletions

modules/db/src/binary_container.cc
modules/db/src/binary_container.hh 138 additions, 0 deletions

modules/db/src/binary_container.hh
modules/db/src/extract_data_helper.cc 51 additions, 0 deletions

modules/db/src/extract_data_helper.cc
modules/db/src/extract_data_helper.hh 39 additions, 0 deletions

modules/db/src/extract_data_helper.hh
modules/db/src/linear_indexer.cc 281 additions, 0 deletions

modules/db/src/linear_indexer.cc
modules/db/src/linear_indexer.hh 108 additions, 0 deletions

modules/db/src/linear_indexer.hh
modules/db/src/paged_array.hh 168 additions, 0 deletions

modules/db/src/paged_array.hh
modules/db/tests/CMakeLists.txt 7 additions, 0 deletions

modules/db/tests/CMakeLists.txt
modules/db/tests/test_linear_db.py 282 additions, 0 deletions

modules/db/tests/test_linear_db.py

with 1864 additions and 4 deletions

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