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doc: clarify deprecation warning/notes
Now we always have a warning on the deprecated doc with a link to the new implementation; and a note on the new implementation which starts with "this is the new implementation" rather than "XXX is deprecated".
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- modules/mol/alg/doc/lddt_deprecated.rst 2 additions, 1 deletionmodules/mol/alg/doc/lddt_deprecated.rst
- modules/mol/alg/doc/stereochemistry.rst 0 additions, 8 deletionsmodules/mol/alg/doc/stereochemistry.rst
- modules/mol/alg/doc/stereochemistry_deprecated.rst 5 additions, 0 deletionsmodules/mol/alg/doc/stereochemistry_deprecated.rst
- modules/mol/alg/pymod/stereochemistry.py 10 additions, 0 deletionsmodules/mol/alg/pymod/stereochemistry.py
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