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parasail as drop-in replacement for LocalAlign/GlobalAlign.SemiGlobalAlign
Must be enabled at compile time. It bends around the respective naive implementations in OST to their parasail counterpart. On one hand its faster and on the other hand it should fix potential suboptimal alignments which are reported in SCHWED-6266
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- CHANGELOG.txt 3 additions, 0 deletionsCHANGELOG.txt
- modules/bindings/doc/bindings.rst 0 additions, 1 deletionmodules/bindings/doc/bindings.rst
- modules/bindings/doc/parasail.rst 0 additions, 74 deletionsmodules/bindings/doc/parasail.rst
- modules/bindings/pymod/CMakeLists.txt 0 additions, 1 deletionmodules/bindings/pymod/CMakeLists.txt
- modules/bindings/pymod/export_parasail.cc 0 additions, 42 deletionsmodules/bindings/pymod/export_parasail.cc
- modules/bindings/pymod/wrap_bindings.cc 0 additions, 2 deletionsmodules/bindings/pymod/wrap_bindings.cc
- modules/bindings/src/CMakeLists.txt 3 additions, 5 deletionsmodules/bindings/src/CMakeLists.txt
- modules/mol/alg/tests/test_qsscore.py 21 additions, 4 deletionsmodules/mol/alg/tests/test_qsscore.py
- modules/seq/alg/doc/seqalg.rst 91 additions, 57 deletionsmodules/seq/alg/doc/seqalg.rst
- modules/seq/alg/pymod/wrap_seq_alg.cc 15 additions, 0 deletionsmodules/seq/alg/pymod/wrap_seq_alg.cc
- modules/seq/alg/src/CMakeLists.txt 3 additions, 1 deletionmodules/seq/alg/src/CMakeLists.txt
- modules/seq/alg/src/wrap_parasail.cc 58 additions, 51 deletionsmodules/seq/alg/src/wrap_parasail.cc
- modules/seq/alg/src/wrap_parasail.hh 53 additions, 0 deletionsmodules/seq/alg/src/wrap_parasail.hh
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