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Commit 81de9df3 authored by pascal's avatar pascal
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re-enter default path for PDB-file in DSSP

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@1959 5a81b35b-ba03-0410-adc8-b2c5c5119f08
parent c3fb76bb
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...@@ -63,13 +63,12 @@ def _CalcRelativeSA(residue_type, absolute_sa): ...@@ -63,13 +63,12 @@ def _CalcRelativeSA(residue_type, absolute_sa):
def AssignDSSP(ent, pdb_path="", extract_burial_status_flag=0, tmp_dir=None): def AssignDSSP(ent, pdb_path="", extract_burial_status_flag=0, tmp_dir=None):
entity_saved_flag = 0 entity_saved_flag = 0
if pdb_path=="": # use of mktemp is a safty problem (use mkstemp and provide file handle to
# use of mktemp is a safty problem (use mkstemp and provide file handle to # subsequent process
# subsequent process pdb_path=tempfile.mktemp(suffix=".pdb",prefix="temp_entity",
pdb_path=tempfile.mktemp(suffix=".pdb",prefix="temp_entity", dir=tmp_dir)
dir=tmp_dir) io.SaveEntity(ent, pdb_path)
io.SaveEntity(ent, pdb_path) entity_saved_flag = 1
entity_saved_flag = 1
#TODO: exception handling (currently errors occuring here #TODO: exception handling (currently errors occuring here
# are handled in the parser LoadDSSP) # are handled in the parser LoadDSSP)
......
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