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schwede
openstructure
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c0581093
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c0581093
authored
14 years ago
by
Marco Biasini
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fix some typos found by Alexandra Kos
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1eb196c2
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modules/doc/intro-01.rst
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-1
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modules/doc/intro-01.rst
modules/mol/base/doc/query.rst
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modules/mol/base/doc/query.rst
modules/seq/base/doc/seq.rst
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modules/seq/base/doc/seq.rst
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6 deletions
modules/doc/intro-01.rst
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@@ -24,7 +24,7 @@ To load a PDB file, simply type
fragment=io.LoadPDB('/path/to/examples/code_fragments/entity/fragment.pdb')
This will load the fragment from the specified file 'fragment.pdb' and store the
result in fragment. The :func:`~ost.io.LoadPDB` has many option, which, for
result in fragment. The :func:`~ost.io.LoadPDB` has many option
s
, which, for
simplicity will not be discussed here. If you want to know more about the
function, type:
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modules/mol/base/doc/query.rst
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@@ -18,7 +18,7 @@ selections in a convenient way. Selections are carried out mainly by calling the
arginines=model.Select('rname=ARG')
A simple selection query (called a predicate) consists
in
a property (here,
A simple selection query (called a predicate) consists
of
a property (here,
`rname`), a comparison operator (here, `=`) and an argument (here, `ARG`). The
return value of a call to the :meth:`EntityHandle.Select` method is always an
:class:`EntityView`. The :class:`EntityView` always contains a full hierarchy of
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modules/seq/base/doc/seq.rst
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@@ -17,10 +17,11 @@ Attaching Structures to Sequences
--------------------------------------------------------------------------------
Being a structural biology framework, it is not surprising that the sequence
classes have been designed to work together with structural data. Each sequence
can have an attached :class:`~mol.EntityView` allowing for fast mapping between
residues in the entity view and position in the sequence.
As OpenStructure is a computational structural biology framework, it is not
surprising that the sequence classes have been designed to work together with
structural data. Each sequence can have an attached :class:`~mol.EntityView`
allowing for fast mapping between residues in the entity view and position in
the sequence.
.. _sequence-offset:
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