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Verified Commit e243f902 authored by Xavier Robin's avatar Xavier Robin
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doc: SCHWED-5481 fix Sphinx links

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......@@ -21,7 +21,7 @@ class LigandScorer:
At the moment, two scores are available:
* lDDT-PLI, that looks at the conservation of protein-ligand contacts
with :func:`lDDT <ost.mol.alg.LocalDistDiffTest>`.
with :class:`lDDT <ost.mol.alg.lddt.lDDTScorer>`.
* Binding-site superposed, symmetry-corrected RMSD that assesses the
accuracy of the ligand pose.
......@@ -30,11 +30,11 @@ class LigandScorer:
of model and target ligands, as described in (Manuscript in preparation).
Results are available as matrices (`(lddt_pli|rmsd)_matrix`), where every
target-model score is reported in a matrix, or as `(lddt_pli|rmsd)` where
target-model score is reported in a matrix; as `(lddt_pli|rmsd)` where
a model-target assignment has been determined, starting from the "best"
possible mapping and using each target and model ligand in a single
assignment, and the results are reported in a dictionary. In addition,
(`(lddt_pli|rmsd)_details`) methods are available with additional details
assignment, and the results are reported in a dictionary; and as
(`(lddt_pli|rmsd)_details`) methods, which report additional details
about different aspects of the scoring such as chain mapping.
The class generally assumes that the
......
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