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Verified Commit e243f902 authored by Xavier Robin's avatar Xavier Robin
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doc: SCHWED-5481 fix Sphinx links

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...@@ -21,7 +21,7 @@ class LigandScorer: ...@@ -21,7 +21,7 @@ class LigandScorer:
At the moment, two scores are available: At the moment, two scores are available:
* lDDT-PLI, that looks at the conservation of protein-ligand contacts * lDDT-PLI, that looks at the conservation of protein-ligand contacts
with :func:`lDDT <ost.mol.alg.LocalDistDiffTest>`. with :class:`lDDT <ost.mol.alg.lddt.lDDTScorer>`.
* Binding-site superposed, symmetry-corrected RMSD that assesses the * Binding-site superposed, symmetry-corrected RMSD that assesses the
accuracy of the ligand pose. accuracy of the ligand pose.
...@@ -30,11 +30,11 @@ class LigandScorer: ...@@ -30,11 +30,11 @@ class LigandScorer:
of model and target ligands, as described in (Manuscript in preparation). of model and target ligands, as described in (Manuscript in preparation).
Results are available as matrices (`(lddt_pli|rmsd)_matrix`), where every Results are available as matrices (`(lddt_pli|rmsd)_matrix`), where every
target-model score is reported in a matrix, or as `(lddt_pli|rmsd)` where target-model score is reported in a matrix; as `(lddt_pli|rmsd)` where
a model-target assignment has been determined, starting from the "best" a model-target assignment has been determined, starting from the "best"
possible mapping and using each target and model ligand in a single possible mapping and using each target and model ligand in a single
assignment, and the results are reported in a dictionary. In addition, assignment, and the results are reported in a dictionary; and as
(`(lddt_pli|rmsd)_details`) methods are available with additional details (`(lddt_pli|rmsd)_details`) methods, which report additional details
about different aspects of the scoring such as chain mapping. about different aspects of the scoring such as chain mapping.
The class generally assumes that the The class generally assumes that the
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