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Commit e879a641 authored by Studer Gabriel's avatar Studer Gabriel
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comparison actions: add ost version to json out

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...@@ -35,7 +35,7 @@ are exempt from this restriction, meaning any arbitrary ligand can be assessed. ...@@ -35,7 +35,7 @@ are exempt from this restriction, meaning any arbitrary ligand can be assessed.
Output can be written in two format: JSON (default) or CSV, controlled by the Output can be written in two format: JSON (default) or CSV, controlled by the
--output-format/-of argument. --output-format/-of argument.
Without additional options, the JSON ouput is a dictionary with three keys: Without additional options, the JSON ouput is a dictionary with four keys:
* "model_ligands": A list of ligands in the model. If ligands were provided * "model_ligands": A list of ligands in the model. If ligands were provided
explicitly with --model-ligands, elements of the list will be the paths to explicitly with --model-ligands, elements of the list will be the paths to
...@@ -48,6 +48,7 @@ Without additional options, the JSON ouput is a dictionary with three keys: ...@@ -48,6 +48,7 @@ Without additional options, the JSON ouput is a dictionary with three keys:
* "status": SUCCESS if everything ran through. In case of failure, the only * "status": SUCCESS if everything ran through. In case of failure, the only
content of the JSON output will be \"status\" set to FAILURE and an content of the JSON output will be \"status\" set to FAILURE and an
additional key: "traceback". additional key: "traceback".
* "ost_version": The OpenStructure version used for computation.
Each score is opt-in and the respective results are available in three keys: Each score is opt-in and the respective results are available in three keys:
...@@ -850,6 +851,7 @@ def _Main(): ...@@ -850,6 +851,7 @@ def _Main():
cleaned_reference, cleaned_reference_ligands, cleaned_reference, cleaned_reference_ligands,
args) args)
out["ost_version"] = ost.__version__
out["status"] = "SUCCESS" out["status"] = "SUCCESS"
if args.output_format == "json": if args.output_format == "json":
with open(args.output, 'w') as fh: with open(args.output, 'w') as fh:
......
...@@ -61,6 +61,7 @@ results: ...@@ -61,6 +61,7 @@ results:
* "min_nuc_length" * "min_nuc_length"
* "lddt_add_mdl_contacts" * "lddt_add_mdl_contacts"
* "dockq_capri_peptide" * "dockq_capri_peptide"
* "ost_version"
The pairwise sequence alignments are computed with Needleman-Wunsch using The pairwise sequence alignments are computed with Needleman-Wunsch using
BLOSUM62 (NUC44 for nucleotides). Many benchmarking scenarios preprocess the BLOSUM62 (NUC44 for nucleotides). Many benchmarking scenarios preprocess the
...@@ -963,6 +964,7 @@ def _Main(): ...@@ -963,6 +964,7 @@ def _Main():
out["min_nuc_length"] = args.min_nuc_length out["min_nuc_length"] = args.min_nuc_length
out["lddt_add_mdl_contacts"] = args.lddt_add_mdl_contacts out["lddt_add_mdl_contacts"] = args.lddt_add_mdl_contacts
out["dockq_capri_peptide"] = args.dockq_capri_peptide out["dockq_capri_peptide"] = args.dockq_capri_peptide
out["ost_version"] = ost.__version__
out["status"] = "SUCCESS" out["status"] = "SUCCESS"
with open(args.output, 'w') as fh: with open(args.output, 'w') as fh:
json.dump(out, fh, indent=4, sort_keys=False) json.dump(out, fh, indent=4, sort_keys=False)
......
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