cmake cosmetics

modules/bindings/CMakeLists.txt

-add_subdirectory(pymod)
+add_subdirectory(src)
 add_subdirectory(tests)
-add_subdirectory(src)
\ No newline at end of file
+add_subdirectory(pymod)

modules/bindings/pymod/CMakeLists.txt

@@ -21,6 +21,6 @@ set(OST_BINDINGS_PYMOD_SOURCES
   wrap_bindings.cc
 )
 
-
 pymod(NAME bindings OUTPUT_DIR ost/bindings CPP ${OST_BINDINGS_PYMOD_SOURCES} 
       PY ${OST_BINDINGS})
+

modules/bindings/src/CMakeLists.txt

@@ -4,8 +4,6 @@ if (COMPILE_TMTOOLS)
   executable(NAME tmscore SOURCES tmscore.f)
 endif()
 
-add_subdirectory(tmalign)
-
 set(OST_BINDINGS_SOURCES 
 wrap_tmalign.cc)
 
@@ -13,6 +11,5 @@ set(OST_BINDINGS_HEADERS
 wrap_tmalign.hh)
 
 module(NAME bindings SOURCES ${OST_BINDINGS_SOURCES}
-       HEADERS ${OST_BINDINGS_TMALIGN_HEADERS} IN_DIR tmalign
-       ${OST_BINDINGS_HEADERS} HEADER_OUTPUT_DIR ost/bindings
+       HEADERS ${OST_BINDINGS_HEADERS} HEADER_OUTPUT_DIR ost/bindings
        DEPENDS_ON ost_geom ost_mol ost_seq)

modules/db/src/CMakeLists.txt

@@ -16,10 +16,11 @@ extract_data_helper.cc
 )
 
 module(NAME db SOURCES ${OST_DB_SOURCES} HEADERS ${OST_DB_HEADERS} 
-       DEPENDS_ON ost_base ost_geom ost_seq sqlite3)
+       DEPENDS_ON ost_base ost_geom ost_seq LINK sqlite3)
 if(WIN32)
   set_target_properties(ost_db PROPERTIES LINK_FLAGS "/DEF:${CMAKE_CURRENT_SOURCE_DIR}/sqlite3.def")
   add_definitions(/DSQLITE_ENABLE_COLUMN_METADATA)
 else(WIN32)
   add_definitions(-DSQLITE_OMIT_LOAD_EXTENSION)
 endif(WIN32)
+