solves a variety of problems that gcc (mainly the c++11 as default)
throws at us.

wrong branch, big sorry

This reverts commit e77d08a6.

The Transform class was moved from the mol module to the geom module. A typedef
was put into the mol namespace in C++, and a similar alias was put into the
mol python module, with an added deprecation warning.

For quite some time, gcc 4.1 (the default compiler on
CenOS 5.5) crashed when compiling ost. Turns out, that
gcc doesn't like the struct in anonymous namespaces in
instantitation some of the more arcance boost.python
templates. Once the anonymous namespaces are removed
everything works.

For quite some time, gcc 4.1 (the default compiler on
CenOS 5.5) crashed when compiling ost. Turns out, that
gcc doesn't like the struct in anonymous namespaces in
instantitation some of the more arcance boost.python
templates. Once the anonymous namespaces are removed
everything works.

changed cmake scripts to allow building as subproject / moved common configuration from startup scripts to separate script

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2706 5a81b35b-ba03-0410-adc8-b2c5c5119f08

removed ost::Message / removed prefix from ost::Error / added exception translation for ost:error to base and removed exception translations in img and info modules / removed some try:/except: clauses in gui pymod scene scripts by using InfoGroup::RetrieveGroup

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2703 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2702 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2599 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2580 5a81b35b-ba03-0410-adc8-b2c5c5119f08

disabling wiggle code for the moment
added option definition for option COMPOUND_LIB for master CMakeLists.txt 
updated win32 build config


git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2069 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@1937 5a81b35b-ba03-0410-adc8-b2c5c5119f08

Exception where the declaration and definition is
available in the header file need to be exported
with __attribute__(visibility("default")) all the
time.

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@1874 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@1742 5a81b35b-ba03-0410-adc8-b2c5c5119f08