Commits · 5780338e17e239a8145ec2f461436ed314fdecc8 · schwede / openstructure

Oct 07, 2020
- docu updates · 5780338e
  Studer Gabriel authored 4 years ago
  
  5780338e
Apr 20, 2020
- Documentation for HMM functionality · 2dffa11a
  Studer Gabriel authored 5 years ago
  
  2dffa11a
Feb 18, 2020
- Documentation for HMM functionality · 1ccd8359
  Studer Gabriel authored 5 years ago
  
  1ccd8359
Dec 09, 2019
- Manual Python 3 port of doc example code · a3d9620b
  Studer Gabriel authored 5 years ago
  
  a3d9620b
Sep 03, 2019
- doc: add an example for MergePairwiseAlignments · efc89acb
  Xavier Robin authored 5 years ago
  
  Unverified
  
  efc89acb
May 22, 2019
- Document arguments and return type of MergePairwiseAlignments · d27c1eac
  Xavier Robin authored 5 years ago
  
  d27c1eac
Apr 17, 2019
- Doc fix: SemiGlobalAlign example · 73b49221
  Gerardo Tauriello authored 6 years ago
  
  73b49221
Jun 24, 2016
- fixed Renumber-function which was failing for the given example code · ad7b23ae
  Gerardo Tauriello authored 8 years ago
  
  View commits for tag 1.6.0-rc2 1.6.0-rc2
  
  ad7b23ae
Jun 23, 2016

Code cleanup: added tests for amino acids and updated doc. for structure comparisons. · d97d8f50
Gerardo Tauriello authored 8 years ago

d97d8f50

SCHWED-1068: Added code to compare structures attached to a multiple seq. aln. · 7babbd69

The code is included in the seq.alg module and it is documented (with an
example) in seqalg.rst. The main new functions are:
- clip_start = seq.alg.ClipAlignment(aln)
- d_map = seq.alg.CreateDistanceMap(aln)
- var_map = seq.alg.CreateVarianceMap(d_map)
- dist_to_mean = seq.alg.CreateDist2Mean(d_map)

7babbd69

Sep 25, 2015
- Added documentation for contact prediciton. · 1edfa21f
  BIOPZ-Johner Niklaus authored 9 years ago
  
  1edfa21f
Mar 04, 2015
- Updated documentation. · ebe0e9d7
  Tjaart de Beer authored 10 years ago and Bienchen committed 10 years ago
  
  Signed-off-by: Stefan Bienert <stefan.bienert@unibas.ch>
  ebe0e9d7
Nov 08, 2013
- and here come the SemiGlobalAlign documentation · 0aba0e80
  BIOPZ-Bertoni Martino authored 11 years ago
  
  0aba0e80
Feb 12, 2013
- Shannon entropy calculation for sequence alignments · b1207558
  Marco Biasini authored 12 years ago
  
  b1207558
Feb 24, 2012
- extend Conservation function to set conservation score of stretches with many... · 33b2a537
  Tobias Schmidt authored 13 years ago
  
  extend Conservation function to set conservation score of stretches with many gaps to zero; added documentation
  33b2a537
Aug 05, 2011
- Finished handling of SEQRES by the MMCifParser, with testing and documentation. · 10c30d1c
  Bienchen authored 13 years ago
  
  10c30d1c
Jul 04, 2011
- Removed from cherry-pick documentation for functions that are not in master · e52d5457
  Valerio Mariani authored 13 years ago
  
  e52d5457
- More fixes, docs and unitests for MergePairwiseAlignment · caea23dd
  Valerio Mariani authored 13 years ago
  
  caea23dd
- More fixes, docs and unitests for MergePairwiseAlignment · f1f0e4ed
  Valerio Mariani authored 13 years ago
  
  f1f0e4ed
May 26, 2011
- Added function seq.alg.GlobalAlign · 0546f80f
  Bienchen authored 13 years ago
  
  0546f80f
May 24, 2011
- added LocalAlign function · 244a541b
  Marco Biasini authored 13 years ago
  
  244a541b
Apr 03, 2011
- added AlignmentFromChainView · fa7a8d57
  Marco Biasini authored 14 years ago
  
  fa7a8d57
Mar 27, 2011
- add AlignToSEQRES function and start documenting seq.alg module · cabaebe3
  Marco Biasini authored 14 years ago
  
  cabaebe3