Up until Python 2.6, MacOS X systems were detected as 32 bit
platforms. Now, they are detected as 64bit systems. This
caused sys.path to be wrong and the ost module could not
be imported

Commited patched file by mistake

Thanks Tobias for diagnosing the problem

On some old versions of Boost.Python, std::out_of_range
is not properly converted to IndexError. Instead, a
RuntimeError is raised. For these versions, we overwrite
the IndexError type with the type of the exception
raised by geom.Vec2()[3].

The code becomes much simpler, cleaner and fixes as weird crash
with Qt 4.8

Added BLOSUM 45,80 and 100. The data for all matrices
(including BLOSUM62) originates from the matlab blosum()
function.

in the structure_analysis.py module.

This is used to make functions written at the CoordFrame level
accesible to analyze both entities and trajectories.

changed unit tests for image handle to reflect changes in observer, which now retains an internal reference to the observed image

Non-error output of lddt all to stdout
Removed from usage text an option that has been removed from the program

fixed windows install statements to install dll instead of lib file

avoid additional Release and Debug directories
switched from deprrecated EXECUTABLE_OUTPUT_PATH to
CMAKE_RUNTIME_OUTPUT_DIRECTORY
deactivated unit test running for windows, as it is broken

fixed some ambiguous fmods and fabs
changed class Bitmap to struct Bitmap in fw decl to be consistent

fixed return type for GetSolidColor in vertex_arrray.hh
re-added accidentally deleted function declaration in chain_type.hh