Conflicts:
	CMakeLists.txt

The feasibility check flag in the profile was ignored until now

Conflicts:

	modules/io/doc/mmcif.rst

Mainly written by Valerio, with a few tweaks by me

Conflicts:
	CMakeLists.txt

to be modified, since old blast versions (e.g. 2.2.16) find 27 hits
in the created testdatabase and new blastversions (e.g. 2.2.27+) find 28
hits. The only check now is, wether the created database works/something
can be found in it.

environment. The problem is, that wu-blast gets called when calling blastp.

as the old ones. It is now possible to create new blastdatabases and
the property seqid has been added to the aligned patches.

The gnu c++ size() implementation for stl containers has O(n) complexity
while empty() has O(1) complexity

The PDB does not allow atom coordinates maller than -999.999 or bigger
than 9999.999. Make sure, our PDB writer honors that restriction.

caused a white background instead of the colormap background
in the extended area

instead of writing tab['x'], one can now write tab.x.

Changed the name of the function to RsidueNamesMatch and changed the
logic to compare chains according to their idex and not to their name