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  1. Nov 29, 2021
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  3. Nov 21, 2021
    • Studer Gabriel's avatar
      Deprecate calling external dssp program · 034099f1
      Studer Gabriel authored
      Support for DSSP 4.0 (https://github.com/PDB-REDO/dssp) has been
      enabled in commit da57a1f6.
      This worked if CLIBD_MON env var points to some CCP4 related
      compound library. In the example of dssp shipped with Debian
      bullseye, that's not the case. The observation there:
      It works if applied on a PDB file downloaded from RCSB with all bells
      and whistles but it doesn't work if only the fix from the above commit
      is applied. As OpenStructure implements all functionality from DSSP
      (secondary structure and solvent accessibility), the binding to an
      external program has been deprecated. dssp.AssignDSSP still exists,
      but mimics the old behaviour using OpenStructure internal implementations.
      034099f1
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