Commits · main · schwede / var3d

Jan 21, 2024

DistStructAnno: set unlikely distances to max_dist instead of None · 14d81462

Studer Gabriel authored 1 year ago

There is an upper distance threshold and anything above that doesn't make
much sense. Before, these values were set to None. However, this made it hard
to distinguish between: 1) it's a large distance 2) its not covered by
structure

14d81462

Jan 17, 2024
- DistStructAnno: annotates distances to user defined structure queries · 590e4faf
  Studer Gabriel authored 1 year ago
  
  590e4faf
Aug 12, 2022
- Properly check for BLAST db existence in PROVEAN VarSeqAnno · f758d66d
  Studer Gabriel authored 2 years ago
  
  f758d66d
Jul 05, 2022
- normalize solvent accessibility correctly · be9bff9f
  Erblin Asllanaj authored 2 years ago
  
  be9bff9f
Jun 08, 2022
- corrected chain mapping for P9WNL5 in tbvar3d_targets.csv · c3c9de15
  Erblin Asllanaj authored 2 years ago
  
  c3c9de15
Jun 02, 2022
- update UP000001584 proteome · 5c37d8c9
  Erblin Asllanaj authored 2 years ago
  
  5c37d8c9
May 12, 2022
- update tbvar3d pipeline - cache for precomputed annotations · 4583e55f
  Studer Gabriel authored 2 years ago
  
  4583e55f
May 03, 2022
- add scripts to generate cache of precomputed data for full TB proteom · 8ca3481d
  Studer Gabriel authored 2 years ago
  
  8ca3481d
May 02, 2022
- update CHANGELOG · 47a48563
  Studer Gabriel authored 2 years ago
  
  View commits for tag 1.2.0 1.2.0
  
  47a48563
Mar 08, 2022
- TBVar3D pipeline: Modify structure_identifier of models that get merged · 73ec9a1d
  Studer Gabriel authored 3 years ago
  
  73ec9a1d
Mar 01, 2022
- Encode confidence in ConSurf values · 23b813f4
  Studer Gabriel authored 3 years ago
  
  Requires a container with latest ConSurf deps
  23b813f4
- initial commit · 3fd33166
  Studer Gabriel authored 3 years ago
  
  View commits for tag 1.1.0 1.1.0
  
  3fd33166
- Initial commit · dfe1faf2
  Studer Gabriel authored 3 years ago
  
  dfe1faf2