feat: merge quantification pipeline

README.md

RUNS/JOB/map/config.yaml

RUNS/JOB/map/run_workflow_local.sh

RUNS/JOB/map/run_workflow_slurm.sh

RUNS/JOB/prepare/config.yaml

RUNS/JOB/prepare/run_workflow_slurm.sh

RUNS/JOB/quantify/cluster.json

RUNS/JOB/quantify/config.yaml

RUNS/JOB/quantify/run_workflow_local.sh

RUNS/JOB/quantify/run_workflow_slurm.sh

environment.root.yml

environment.yml

images/rule_graph_map.svg

images/rule_graph_prepare.svg

images/rule_graph_quantify.svg

images/workflow_dag_map.svg

images/workflow_dag_prepare.svg

images/workflow_dag_quantify.svg

scripts/merge_tables.R

scripts/mirna_quantification.py