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Alex Kanitz's avatar
closed merge request !26 "refactor: use local files for genome resources" at zavolan_group / pipelines / mirflowz
Alex Kanitz's avatar
commented on merge request !26 "refactor: use local files for genome resources" at zavolan_group / pipelines / mirflowz

Closed in favor of https://github.com/zavolanlab/mirflowz/pull/13

Alex Kanitz's avatar
closed issue #37 "Migrate repo to GitHub" at zavolan_group / pipelines / mirflowz
Alex Kanitz's avatar
commented on issue #37 "Migrate repo to GitHub" at zavolan_group / pipelines / mirflowz

Great, thanks!...

Alex Kanitz's avatar
deleted branch migrate-github-note at zavolan_group / pipelines / mirflowz
Alex Kanitz's avatar
pushed to branch dev at zavolan_group / pipelines / mirflowz
  • 5acb3788 · docs: add GitHub migration note
Alex Kanitz's avatar
accepted merge request !28 "docs: add GitHub migration note" at zavolan_group / pipelines / mirflowz
Alex Kanitz's avatar
opened merge request !28 "docs: add GitHub migration note" at zavolan_group / pipelines / mirflowz
Alex Kanitz's avatar
pushed new branch migrate-github-note at zavolan_group / pipelines / mirflowz
Iris Mestres Pascual's avatar
commented on issue #39 "Documentation out of sync" at zavolan_group / pipelines / mirflowz

An update of the README.md has been done in a different branch but the pull request not due to:...

Iris Mestres Pascual's avatar
commented on issue #37 "Migrate repo to GitHub" at zavolan_group / pipelines / mirflowz

The repository can be found on https://github.com/zavolanlab/mirflowz . There a contributor I do not know but it appeared when making the migration (...

Iris Mestres Pascual's avatar
closed issue #36 "Remove RUNS directory" at zavolan_group / pipelines / mirflowz
Iris Mestres Pascual's avatar
opened issue #40 "Dependencies update" at zavolan_group / pipelines / mirflowz
Iris Mestres Pascual's avatar
pushed to branch 39-sync-documentation at zavolan_group / pipelines / mirflowz
Iris Mestres Pascual's avatar
pushed new branch 39-sync-documentation at zavolan_group / pipelines / mirflowz
Iris Mestres Pascual's avatar
closed merge request !23 "Refactor: Use only local files. Use chr19 in test_files." at zavolan_group / pipelines / mirflowz
Iris Mestres Pascual's avatar
commented on issue #39 "Documentation out of sync" at zavolan_group / pipelines / mirflowz

Okay, I'll update the README.md to reflect what we have right now and think of how to solve the usage part later on.

Alex Kanitz's avatar
commented on issue #39 "Documentation out of sync" at zavolan_group / pipelines / mirflowz

I will much prefer if you suggest what you wanna do, in detail and in a single message. I can then check and sign it off or ask for some changes....

Iris Mestres Pascual's avatar
commented on issue #39 "Documentation out of sync" at zavolan_group / pipelines / mirflowz

And regarding the Usage section?

Alex Kanitz's avatar
commented on issue #39 "Documentation out of sync" at zavolan_group / pipelines / mirflowz

Of course! Create a single Snakemake rule graph for the entire combined workflow and use that instead of the current images.