refactor: prepare for merging pipelines

README.md

RUNS/COPY_ENTIRE_JOB_DIRECTORY_FOR_EACH_RUN

RUNS/JOB/prepare_annotation/config.yaml

RUNS/JOB/prepare_annotation/run_workflow_local.sh

RUNS/JOB/prepare_annotation/run_workflow_slurm.sh

images/rule_graph_prepare_annotation.svg

images/workflow_dag_prepare_annotation.svg

jobscript.sh

test/config_prepare_annotation.yaml

test/snakemake_report.html

test/test_dag.sh

test/test_rule_graph.sh

test/test_workflow_local.sh

test/test_workflow_slurm.sh

workflow/prepare_annotation/Snakefile

workflow/prepare_annotation/cluster.json