Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
M
mirflowz
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Container registry
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
This is an archived project. Repository and other project resources are read-only.
Show more breadcrumbs
zavolan_group
pipelines
mirflowz
Commits
ee2df41f
Commit
ee2df41f
authored
2 years ago
by
Iris Mestres Pascual
Browse files
Options
Downloads
Patches
Plain Diff
docs: update DAG and rule graph
parent
9dd4b746
No related branches found
No related tags found
No related merge requests found
Changes
2
Expand all
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
images/rule_graph.svg
+817
-0
817 additions, 0 deletions
images/rule_graph.svg
images/workflow_dag.svg
+1784
-0
1784 additions, 0 deletions
images/workflow_dag.svg
with
2601 additions
and
0 deletions
images/rule_graph.svg
0 → 100644
+
817
−
0
View file @
ee2df41f
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.40.1 (20161225.0304)
-->
<!-- Title: snakemake_dag Pages: 1 -->
<svg
width=
"1115pt"
height=
"1772pt"
viewBox=
"0.00 0.00 1114.50 1772.00"
xmlns=
"http://www.w3.org/2000/svg"
xmlns:xlink=
"http://www.w3.org/1999/xlink"
>
<g
id=
"graph0"
class=
"graph"
transform=
"scale(1 1) rotate(0) translate(4 1768)"
>
<title>
snakemake_dag
</title>
<polygon
fill=
"#ffffff"
stroke=
"transparent"
points=
"-4,4 -4,-1768 1110.5,-1768 1110.5,4 -4,4"
/>
<!-- 0 -->
<g
id=
"node1"
class=
"node"
>
<title>
0
</title>
<path
fill=
"none"
stroke=
"#d6d856"
stroke-width=
"2"
d=
"M479,-36C479,-36 449,-36 449,-36 443,-36 437,-30 437,-24 437,-24 437,-12 437,-12 437,-6 443,0 449,0 449,0 479,0 479,0 485,0 491,-6 491,-12 491,-12 491,-24 491,-24 491,-30 485,-36 479,-36"
/>
<text
text-anchor=
"middle"
x=
"464"
y=
"-15.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
finish
</text>
</g>
<!-- 1 -->
<g
id=
"node2"
class=
"node"
>
<title>
1
</title>
<path
fill=
"none"
stroke=
"#d8ac56"
stroke-width=
"2"
d=
"M1036.5,-1404C1036.5,-1404 849.5,-1404 849.5,-1404 843.5,-1404 837.5,-1398 837.5,-1392 837.5,-1392 837.5,-1380 837.5,-1380 837.5,-1374 843.5,-1368 849.5,-1368 849.5,-1368 1036.5,-1368 1036.5,-1368 1042.5,-1368 1048.5,-1374 1048.5,-1380 1048.5,-1380 1048.5,-1392 1048.5,-1392 1048.5,-1398 1042.5,-1404 1036.5,-1404"
/>
<text
text-anchor=
"middle"
x=
"943"
y=
"-1383.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
generate_segemehl_index_transcriptome
</text>
</g>
<!-- 1->0 -->
<g
id=
"edge4"
class=
"edge"
>
<title>
1
->
0
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M951.483,-1367.81C963.2246,-1340.9218 983,-1288.7039 983,-1242 983,-1242 983,-1242 983,-162 983,-61.9276 620.1915,-28.5314 501.2584,-20.2722"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"501.3859,-16.7729 491.173,-19.5919 500.9147,-23.7571 501.3859,-16.7729"
/>
</g>
<!-- 34 -->
<g
id=
"node35"
class=
"node"
>
<title>
34
</title>
<path
fill=
"none"
stroke=
"#56d8a9"
stroke-width=
"2"
d=
"M943,-1332C943,-1332 789,-1332 789,-1332 783,-1332 777,-1326 777,-1320 777,-1320 777,-1308 777,-1308 777,-1302 783,-1296 789,-1296 789,-1296 943,-1296 943,-1296 949,-1296 955,-1302 955,-1308 955,-1308 955,-1320 955,-1320 955,-1326 949,-1332 943,-1332"
/>
<text
text-anchor=
"middle"
x=
"866"
y=
"-1311.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
mapping_transcriptome_segemehl
</text>
</g>
<!-- 1->34 -->
<g
id=
"edge48"
class=
"edge"
>
<title>
1
->
34
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M923.5696,-1367.8314C914.268,-1359.1337 902.9796,-1348.5783 892.8714,-1339.1265"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"895.1189,-1336.4363 885.4241,-1332.1628 890.3379,-1341.5493 895.1189,-1336.4363"
/>
</g>
<!-- 2 -->
<g
id=
"node3"
class=
"node"
>
<title>
2
</title>
<path
fill=
"none"
stroke=
"#56d85b"
stroke-width=
"2"
d=
"M850.5,-1476C850.5,-1476 811.5,-1476 811.5,-1476 805.5,-1476 799.5,-1470 799.5,-1464 799.5,-1464 799.5,-1452 799.5,-1452 799.5,-1446 805.5,-1440 811.5,-1440 811.5,-1440 850.5,-1440 850.5,-1440 856.5,-1440 862.5,-1446 862.5,-1452 862.5,-1452 862.5,-1464 862.5,-1464 862.5,-1470 856.5,-1476 850.5,-1476"
/>
<text
text-anchor=
"middle"
x=
"831"
y=
"-1455.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
trim_fasta
</text>
</g>
<!-- 2->1 -->
<g
id=
"edge9"
class=
"edge"
>
<title>
2
->
1
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M859.2623,-1439.8314C873.4552,-1430.7074 890.8282,-1419.539 906.0636,-1409.7449"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"908.2276,-1412.5146 914.7467,-1404.1628 904.4422,-1406.6263 908.2276,-1412.5146"
/>
</g>
<!-- 2->34 -->
<g
id=
"edge49"
class=
"edge"
>
<title>
2
->
34
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M827.3026,-1439.9468C824.2658,-1421.4363 821.5554,-1392.036 829,-1368 832.0445,-1358.1704 837.5641,-1348.5387 843.4271,-1340.1946"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"846.3663,-1342.1092 849.5719,-1332.011 840.7686,-1337.9061 846.3663,-1342.1092"
/>
</g>
<!-- 40 -->
<g
id=
"node41"
class=
"node"
>
<title>
40
</title>
<path
fill=
"none"
stroke=
"#61d856"
stroke-width=
"2"
d=
"M730.5,-1404C730.5,-1404 579.5,-1404 579.5,-1404 573.5,-1404 567.5,-1398 567.5,-1392 567.5,-1392 567.5,-1380 567.5,-1380 567.5,-1374 573.5,-1368 579.5,-1368 579.5,-1368 730.5,-1368 730.5,-1368 736.5,-1368 742.5,-1374 742.5,-1380 742.5,-1380 742.5,-1392 742.5,-1392 742.5,-1398 736.5,-1404 730.5,-1404"
/>
<text
text-anchor=
"middle"
x=
"655"
y=
"-1383.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
mapping_transcriptome_oligomap
</text>
</g>
<!-- 2->40 -->
<g
id=
"edge56"
class=
"edge"
>
<title>
2
->
40
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M799.1277,-1444.9613C773.921,-1434.6495 738.1695,-1420.0239 708.5807,-1407.9194"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"709.7924,-1404.6336 699.2117,-1404.0866 707.1419,-1411.1124 709.7924,-1404.6336"
/>
</g>
<!-- 3 -->
<g
id=
"node4"
class=
"node"
>
<title>
3
</title>
<path
fill=
"none"
stroke=
"#d85656"
stroke-width=
"2"
d=
"M892,-1548C892,-1548 770,-1548 770,-1548 764,-1548 758,-1542 758,-1536 758,-1536 758,-1524 758,-1524 758,-1518 764,-1512 770,-1512 770,-1512 892,-1512 892,-1512 898,-1512 904,-1518 904,-1524 904,-1524 904,-1536 904,-1536 904,-1542 898,-1548 892,-1548"
/>
<text
text-anchor=
"middle"
x=
"831"
y=
"-1527.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
extract_transcriptome_seqs
</text>
</g>
<!-- 3->2 -->
<g
id=
"edge10"
class=
"edge"
>
<title>
3
->
2
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M831,-1511.8314C831,-1504.131 831,-1494.9743 831,-1486.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"834.5001,-1486.4132 831,-1476.4133 827.5001,-1486.4133 834.5001,-1486.4132"
/>
</g>
<!-- 4 -->
<g
id=
"node5"
class=
"node"
>
<title>
4
</title>
<path
fill=
"none"
stroke=
"#9fd856"
stroke-width=
"2"
d=
"M341,-1620C341,-1620 269,-1620 269,-1620 263,-1620 257,-1614 257,-1608 257,-1608 257,-1596 257,-1596 257,-1590 263,-1584 269,-1584 269,-1584 341,-1584 341,-1584 347,-1584 353,-1590 353,-1596 353,-1596 353,-1608 353,-1608 353,-1614 347,-1620 341,-1620"
/>
<text
text-anchor=
"middle"
x=
"305"
y=
"-1599.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
genome_process
</text>
</g>
<!-- 4->3 -->
<g
id=
"edge11"
class=
"edge"
>
<title>
4
->
3
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M353.1613,-1595.4651C427.7113,-1585.3422 575.5489,-1565.2385 701,-1548 716.0911,-1545.9263 732.1661,-1543.7081 747.682,-1541.5623"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"748.3556,-1545.0025 757.7814,-1540.1649 747.3961,-1538.0686 748.3556,-1545.0025"
/>
</g>
<!-- 6 -->
<g
id=
"node7"
class=
"node"
>
<title>
6
</title>
<path
fill=
"none"
stroke=
"#d85e56"
stroke-width=
"2"
d=
"M570,-1548C570,-1548 410,-1548 410,-1548 404,-1548 398,-1542 398,-1536 398,-1536 398,-1524 398,-1524 398,-1518 404,-1512 410,-1512 410,-1512 570,-1512 570,-1512 576,-1512 582,-1518 582,-1524 582,-1524 582,-1536 582,-1536 582,-1542 576,-1548 570,-1548"
/>
<text
text-anchor=
"middle"
x=
"490"
y=
"-1527.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
generate_segemehl_index_genome
</text>
</g>
<!-- 4->6 -->
<g
id=
"edge13"
class=
"edge"
>
<title>
4
->
6
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M351.6833,-1583.8314C376.7559,-1574.0734 407.8367,-1561.977 434.1809,-1551.7242"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"435.6027,-1554.9266 443.6524,-1548.038 433.0638,-1548.4033 435.6027,-1554.9266"
/>
</g>
<!-- 9 -->
<g
id=
"node10"
class=
"node"
>
<title>
9
</title>
<path
fill=
"none"
stroke=
"#56d87b"
stroke-width=
"2"
d=
"M196,-900C196,-900 92,-900 92,-900 86,-900 80,-894 80,-888 80,-888 80,-876 80,-876 80,-870 86,-864 92,-864 92,-864 196,-864 196,-864 202,-864 208,-870 208,-876 208,-876 208,-888 208,-888 208,-894 202,-900 196,-900"
/>
<text
text-anchor=
"middle"
x=
"144"
y=
"-879.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
create_header_genome
</text>
</g>
<!-- 4->9 -->
<g
id=
"edge16"
class=
"edge"
>
<title>
4
->
9
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M256.829,-1590.616C217.1776,-1580.2861 165.2578,-1564.2301 151,-1548 124.0187,-1517.2865 132,-1498.8816 132,-1458 132,-1458 132,-1458 132,-1026 132,-985.7369 136.7166,-939.3594 140.2358,-910.3596"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"143.7452,-910.5021 141.5136,-900.145 136.7993,-909.6332 143.7452,-910.5021"
/>
</g>
<!-- 13 -->
<g
id=
"node14"
class=
"node"
>
<title>
13
</title>
<path
fill=
"none"
stroke=
"#56d882"
stroke-width=
"2"
d=
"M219.5,-1548C219.5,-1548 172.5,-1548 172.5,-1548 166.5,-1548 160.5,-1542 160.5,-1536 160.5,-1536 160.5,-1524 160.5,-1524 160.5,-1518 166.5,-1512 172.5,-1512 172.5,-1512 219.5,-1512 219.5,-1512 225.5,-1512 231.5,-1518 231.5,-1524 231.5,-1524 231.5,-1536 231.5,-1536 231.5,-1542 225.5,-1548 219.5,-1548"
/>
<text
text-anchor=
"middle"
x=
"196"
y=
"-1527.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
mirna_anno
</text>
</g>
<!-- 4->13 -->
<g
id=
"edge21"
class=
"edge"
>
<title>
4
->
13
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M277.4947,-1583.8314C263.682,-1574.7074 246.7744,-1563.539 231.9471,-1553.7449"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"233.7696,-1550.7541 223.4965,-1548.1628 229.9114,-1556.5949 233.7696,-1550.7541"
/>
</g>
<!-- 14 -->
<g
id=
"node15"
class=
"node"
>
<title>
14
</title>
<path
fill=
"none"
stroke=
"#c6d856"
stroke-width=
"2"
d=
"M292,-1548C292,-1548 262,-1548 262,-1548 256,-1548 250,-1542 250,-1536 250,-1536 250,-1524 250,-1524 250,-1518 256,-1512 262,-1512 262,-1512 292,-1512 292,-1512 298,-1512 304,-1518 304,-1524 304,-1524 304,-1536 304,-1536 304,-1542 298,-1548 292,-1548"
/>
<text
text-anchor=
"middle"
x=
"277"
y=
"-1527.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
dict_chr
</text>
</g>
<!-- 4->14 -->
<g
id=
"edge22"
class=
"edge"
>
<title>
4
->
14
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M297.9344,-1583.8314C294.874,-1575.9617 291.2221,-1566.5712 287.8318,-1557.8533"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"291.0473,-1556.4647 284.1607,-1548.4133 284.5232,-1559.0019 291.0473,-1556.4647"
/>
</g>
<!-- 21 -->
<g
id=
"node22"
class=
"node"
>
<title>
21
</title>
<path
fill=
"none"
stroke=
"#56d88a"
stroke-width=
"2"
d=
"M92,-1260C92,-1260 12,-1260 12,-1260 6,-1260 0,-1254 0,-1248 0,-1248 0,-1236 0,-1236 0,-1230 6,-1224 12,-1224 12,-1224 92,-1224 92,-1224 98,-1224 104,-1230 104,-1236 104,-1236 104,-1248 104,-1248 104,-1254 98,-1260 92,-1260"
/>
<text
text-anchor=
"middle"
x=
"52"
y=
"-1239.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
create_index_fasta
</text>
</g>
<!-- 4->21 -->
<g
id=
"edge30"
class=
"edge"
>
<title>
4
->
21
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M256.8314,-1592.6806C208.7623,-1582.5881 139.1027,-1565.5641 118,-1548 83.6269,-1519.3908 73,-1502.7214 73,-1458 73,-1458 73,-1458 73,-1386 73,-1345.2729 64.673,-1298.7384 58.5061,-1269.8595"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"61.9177,-1269.0768 56.3512,-1260.0621 55.0811,-1270.5806 61.9177,-1269.0768"
/>
</g>
<!-- 46 -->
<g
id=
"node47"
class=
"node"
>
<title>
46
</title>
<path
fill=
"none"
stroke=
"#d86656"
stroke-width=
"2"
d=
"M499.5,-1476C499.5,-1476 372.5,-1476 372.5,-1476 366.5,-1476 360.5,-1470 360.5,-1464 360.5,-1464 360.5,-1452 360.5,-1452 360.5,-1446 366.5,-1440 372.5,-1440 372.5,-1440 499.5,-1440 499.5,-1440 505.5,-1440 511.5,-1446 511.5,-1452 511.5,-1452 511.5,-1464 511.5,-1464 511.5,-1470 505.5,-1476 499.5,-1476"
/>
<text
text-anchor=
"middle"
x=
"436"
y=
"-1455.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
mapping_genome_segemehl
</text>
</g>
<!-- 4->46 -->
<g
id=
"edge65"
class=
"edge"
>
<title>
4
->
46
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M321.5912,-1583.7623C344.6242,-1558.4436 386.4036,-1512.5182 412.5973,-1483.7251"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"415.4031,-1485.842 419.5435,-1476.0896 410.2252,-1481.1315 415.4031,-1485.842"
/>
</g>
<!-- 48 -->
<g
id=
"node49"
class=
"node"
>
<title>
48
</title>
<path
fill=
"none"
stroke=
"#59d856"
stroke-width=
"2"
d=
"M491,-1404C491,-1404 367,-1404 367,-1404 361,-1404 355,-1398 355,-1392 355,-1392 355,-1380 355,-1380 355,-1374 361,-1368 367,-1368 367,-1368 491,-1368 491,-1368 497,-1368 503,-1374 503,-1380 503,-1380 503,-1392 503,-1392 503,-1398 497,-1404 491,-1404"
/>
<text
text-anchor=
"middle"
x=
"429"
y=
"-1383.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
mapping_genome_oligomap
</text>
</g>
<!-- 4->48 -->
<g
id=
"edge69"
class=
"edge"
>
<title>
4
->
48
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M308.665,-1583.8908C316.4337,-1546.7481 335.2213,-1463.4635 352,-1440 360.4831,-1428.1371 372.4203,-1417.9785 384.3686,-1409.7791"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"386.5418,-1412.541 393.0214,-1404.1586 382.7287,-1406.6707 386.5418,-1412.541"
/>
</g>
<!-- 5 -->
<g
id=
"node6"
class=
"node"
>
<title>
5
</title>
<path
fill=
"none"
stroke=
"#56d86b"
stroke-width=
"2"
d=
"M984.5,-1620C984.5,-1620 923.5,-1620 923.5,-1620 917.5,-1620 911.5,-1614 911.5,-1608 911.5,-1608 911.5,-1596 911.5,-1596 911.5,-1590 917.5,-1584 923.5,-1584 923.5,-1584 984.5,-1584 984.5,-1584 990.5,-1584 996.5,-1590 996.5,-1596 996.5,-1596 996.5,-1608 996.5,-1608 996.5,-1614 990.5,-1620 984.5,-1620"
/>
<text
text-anchor=
"middle"
x=
"954"
y=
"-1599.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
filter_anno_gtf
</text>
</g>
<!-- 5->3 -->
<g
id=
"edge12"
class=
"edge"
>
<title>
5
->
3
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M922.9619,-1583.8314C907.2295,-1574.6221 887.9389,-1563.3301 871.0956,-1553.4706"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"872.4265,-1550.1941 862.0282,-1548.1628 868.8902,-1556.2352 872.4265,-1550.1941"
/>
</g>
<!-- 8 -->
<g
id=
"node9"
class=
"node"
>
<title>
8
</title>
<path
fill=
"none"
stroke=
"#d8cb56"
stroke-width=
"2"
d=
"M1094.5,-1188C1094.5,-1188 1035.5,-1188 1035.5,-1188 1029.5,-1188 1023.5,-1182 1023.5,-1176 1023.5,-1176 1023.5,-1164 1023.5,-1164 1023.5,-1158 1029.5,-1152 1035.5,-1152 1035.5,-1152 1094.5,-1152 1094.5,-1152 1100.5,-1152 1106.5,-1158 1106.5,-1164 1106.5,-1164 1106.5,-1176 1106.5,-1176 1106.5,-1182 1100.5,-1188 1094.5,-1188"
/>
<text
text-anchor=
"middle"
x=
"1065"
y=
"-1167.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
get_exons_gtf
</text>
</g>
<!-- 5->8 -->
<g
id=
"edge15"
class=
"edge"
>
<title>
5
->
8
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M985.0381,-1583.9286C1021.4758,-1560.1156 1077,-1514.5511 1077,-1458 1077,-1458 1077,-1458 1077,-1314 1077,-1273.7369 1072.2834,-1227.3594 1068.7642,-1198.3596"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"1072.2007,-1197.6332 1067.4864,-1188.145 1065.2548,-1198.5021 1072.2007,-1197.6332"
/>
</g>
<!-- 6->0 -->
<g
id=
"edge1"
class=
"edge"
>
<title>
6
->
0
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M502.9048,-1511.8972C509.4323,-1501.8087 516.8357,-1488.7411 521,-1476 543.5059,-1407.1416 539,-1386.4431 539,-1314 539,-1314 539,-1314 539,-162 539,-116.7853 509.5542,-71.6965 487.5632,-44.3276"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"490.0916,-41.8931 481.0187,-36.4221 484.6996,-46.357 490.0916,-41.8931"
/>
</g>
<!-- 6->46 -->
<g
id=
"edge63"
class=
"edge"
>
<title>
6
->
46
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M476.3735,-1511.8314C470.154,-1503.5386 462.6678,-1493.557 455.84,-1484.4533"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"458.61,-1482.3133 449.81,-1476.4133 453.01,-1486.5133 458.61,-1482.3133"
/>
</g>
<!-- 7 -->
<g
id=
"node8"
class=
"node"
>
<title>
7
</title>
<path
fill=
"none"
stroke=
"#56d8c9"
stroke-width=
"2"
d=
"M1057,-1044C1057,-1044 1023,-1044 1023,-1044 1017,-1044 1011,-1038 1011,-1032 1011,-1032 1011,-1020 1011,-1020 1011,-1014 1017,-1008 1023,-1008 1023,-1008 1057,-1008 1057,-1008 1063,-1008 1069,-1014 1069,-1020 1069,-1020 1069,-1032 1069,-1032 1069,-1038 1063,-1044 1057,-1044"
/>
<text
text-anchor=
"middle"
x=
"1040"
y=
"-1023.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
gtftobed
</text>
</g>
<!-- 7->0 -->
<g
id=
"edge8"
class=
"edge"
>
<title>
7
->
0
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M1037.928,-1007.8427C1034.9989,-980.5621 1030,-927.359 1030,-882 1030,-882 1030,-882 1030,-162 1030,-119.3959 1030.6527,-98.1267 997,-72 957.9501,-41.6832 616.1215,-24.4766 501.3755,-19.5151"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"501.4489,-16.0151 491.3089,-19.0862 501.1508,-23.0088 501.4489,-16.0151"
/>
</g>
<!-- 30 -->
<g
id=
"node31"
class=
"node"
>
<title>
30
</title>
<path
fill=
"none"
stroke=
"#56d8b9"
stroke-width=
"2"
d=
"M782.5,-972C782.5,-972 729.5,-972 729.5,-972 723.5,-972 717.5,-966 717.5,-960 717.5,-960 717.5,-948 717.5,-948 717.5,-942 723.5,-936 729.5,-936 729.5,-936 782.5,-936 782.5,-936 788.5,-936 794.5,-942 794.5,-948 794.5,-948 794.5,-960 794.5,-960 794.5,-966 788.5,-972 782.5,-972"
/>
<text
text-anchor=
"middle"
x=
"756"
y=
"-951.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
trans_to_gen
</text>
</g>
<!-- 7->30 -->
<g
id=
"edge42"
class=
"edge"
>
<title>
7
->
30
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M1010.9417,-1018.6331C962.2967,-1006.3006 863.8888,-981.3521 804.5761,-966.3151"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"805.2454,-962.8741 794.6919,-963.8092 803.5251,-969.6594 805.2454,-962.8741"
/>
</g>
<!-- 8->7 -->
<g
id=
"edge14"
class=
"edge"
>
<title>
8
->
7
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M1061.8337,-1151.7623C1057.5508,-1127.0928 1049.8715,-1082.8598 1044.8564,-1053.9731"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"1048.2996,-1053.3435 1043.1406,-1044.0896 1041.4027,-1054.541 1048.2996,-1053.3435"
/>
</g>
<!-- 9->0 -->
<g
id=
"edge5"
class=
"edge"
>
<title>
9
->
0
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M132.2828,-863.7256C116.401,-837.1531 90,-785.793 90,-738 90,-738 90,-738 90,-666 90,-569.1386 61,-546.8614 61,-450 61,-450 61,-450 61,-162 61,-109.9317 90.8041,-97.8543 136,-72 185.0586,-43.936 351.0542,-27.205 426.3301,-20.8934"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"427.0733,-24.3442 436.7534,-20.0376 426.5005,-17.3677 427.0733,-24.3442"
/>
</g>
<!-- 28 -->
<g
id=
"node29"
class=
"node"
>
<title>
28
</title>
<path
fill=
"none"
stroke=
"#d8c356"
stroke-width=
"2"
d=
"M427,-828C427,-828 379,-828 379,-828 373,-828 367,-822 367,-816 367,-816 367,-804 367,-804 367,-798 373,-792 379,-792 379,-792 427,-792 427,-792 433,-792 439,-798 439,-804 439,-804 439,-816 439,-816 439,-822 433,-828 427,-828"
/>
<text
text-anchor=
"middle"
x=
"403"
y=
"-807.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
add_header
</text>
</g>
<!-- 9->28 -->
<g
id=
"edge37"
class=
"edge"
>
<title>
9
->
28
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M208.0225,-864.2022C254.2444,-851.3529 315.5688,-834.3052 357.0052,-822.7862"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"358.1324,-826.1056 366.8296,-820.0551 356.2575,-819.3614 358.1324,-826.1056"
/>
</g>
<!-- 10 -->
<g
id=
"node11"
class=
"node"
>
<title>
10
</title>
<path
fill=
"none"
stroke=
"#56d8b1"
stroke-width=
"2"
d=
"M274.5,-468C274.5,-468 241.5,-468 241.5,-468 235.5,-468 229.5,-462 229.5,-456 229.5,-456 229.5,-444 229.5,-444 229.5,-438 235.5,-432 241.5,-432 241.5,-432 274.5,-432 274.5,-432 280.5,-432 286.5,-438 286.5,-444 286.5,-444 286.5,-456 286.5,-456 286.5,-462 280.5,-468 274.5,-468"
/>
<text
text-anchor=
"middle"
x=
"258"
y=
"-447.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
gfftobed
</text>
</g>
<!-- 10->0 -->
<g
id=
"edge7"
class=
"edge"
>
<title>
10
->
0
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M258.2072,-431.8149C258.5001,-404.4989 259,-351.2511 259,-306 259,-306 259,-306 259,-162 259,-80.7983 368.0332,-41.4472 427.0652,-26.0926"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"427.9246,-29.4856 436.7776,-23.6653 426.2273,-22.6944 427.9246,-29.4856"
/>
</g>
<!-- 19 -->
<g
id=
"node20"
class=
"node"
>
<title>
19
</title>
<path
fill=
"none"
stroke=
"#56b9d8"
stroke-width=
"2"
d=
"M218.5,-396C218.5,-396 139.5,-396 139.5,-396 133.5,-396 127.5,-390 127.5,-384 127.5,-384 127.5,-372 127.5,-372 127.5,-366 133.5,-360 139.5,-360 139.5,-360 218.5,-360 218.5,-360 224.5,-360 230.5,-366 230.5,-372 230.5,-372 230.5,-384 230.5,-384 230.5,-390 224.5,-396 218.5,-396"
/>
<text
text-anchor=
"middle"
x=
"179"
y=
"-375.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
filter_mature_mirs
</text>
</g>
<!-- 10->19 -->
<g
id=
"edge28"
class=
"edge"
>
<title>
10
->
19
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M238.065,-431.8314C228.5217,-423.1337 216.9401,-412.5783 206.5694,-403.1265"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"208.6772,-400.3121 198.9287,-396.1628 203.962,-405.4857 208.6772,-400.3121"
/>
</g>
<!-- 52 -->
<g
id=
"node53"
class=
"node"
>
<title>
52
</title>
<path
fill=
"none"
stroke=
"#88d856"
stroke-width=
"2"
d=
"M386.5,-252C386.5,-252 321.5,-252 321.5,-252 315.5,-252 309.5,-246 309.5,-240 309.5,-240 309.5,-228 309.5,-228 309.5,-222 315.5,-216 321.5,-216 321.5,-216 386.5,-216 386.5,-216 392.5,-216 398.5,-222 398.5,-228 398.5,-228 398.5,-240 398.5,-240 398.5,-246 392.5,-252 386.5,-252"
/>
<text
text-anchor=
"middle"
x=
"354"
y=
"-231.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
intersect_mirna
</text>
</g>
<!-- 10->52 -->
<g
id=
"edge74"
class=
"edge"
>
<title>
10
->
52
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M264.4072,-431.6638C275.2414,-401.2571 298.4139,-338.7216 323,-288 327.363,-278.9991 332.622,-269.45 337.5593,-260.925"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"340.6686,-262.5426 342.7329,-252.1508 334.6388,-258.9872 340.6686,-262.5426"
/>
</g>
<!-- 11 -->
<g
id=
"node12"
class=
"node"
>
<title>
11
</title>
<path
fill=
"none"
stroke=
"#56d873"
stroke-width=
"2"
d=
"M295,-828C295,-828 221,-828 221,-828 215,-828 209,-822 209,-816 209,-816 209,-804 209,-804 209,-798 215,-792 221,-792 221,-792 295,-792 295,-792 301,-792 307,-798 307,-804 307,-804 307,-816 307,-816 307,-822 301,-828 295,-828"
/>
<text
text-anchor=
"middle"
x=
"258"
y=
"-807.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
filter_mir_1_anno
</text>
</g>
<!-- 11->10 -->
<g
id=
"edge17"
class=
"edge"
>
<title>
11
->
10
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M258,-791.8146C258,-764.4983 258,-711.25 258,-666 258,-666 258,-666 258,-594 258,-553.876 258,-507.4631 258,-478.4177"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"261.5001,-478.1853 258,-468.1854 254.5001,-478.1854 261.5001,-478.1853"
/>
</g>
<!-- 12 -->
<g
id=
"node13"
class=
"node"
>
<title>
12
</title>
<path
fill=
"none"
stroke=
"#d8a456"
stroke-width=
"2"
d=
"M292,-1476C292,-1476 224,-1476 224,-1476 218,-1476 212,-1470 212,-1464 212,-1464 212,-1452 212,-1452 212,-1446 218,-1440 224,-1440 224,-1440 292,-1440 292,-1440 298,-1440 304,-1446 304,-1452 304,-1452 304,-1464 304,-1464 304,-1470 298,-1476 292,-1476"
/>
<text
text-anchor=
"middle"
x=
"258"
y=
"-1455.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
map_chr_names
</text>
</g>
<!-- 12->11 -->
<g
id=
"edge18"
class=
"edge"
>
<title>
12
->
11
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M258,-1439.8146C258,-1412.4983 258,-1359.25 258,-1314 258,-1314 258,-1314 258,-954 258,-913.876 258,-867.4631 258,-838.4177"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"261.5001,-838.1853 258,-828.1854 254.5001,-838.1854 261.5001,-838.1853"
/>
</g>
<!-- 13->12 -->
<g
id=
"edge19"
class=
"edge"
>
<title>
13
->
12
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M211.6452,-1511.8314C218.8591,-1503.454 227.557,-1493.3531 235.4605,-1484.1749"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"238.2711,-1486.2748 242.1441,-1476.4133 232.9667,-1481.7071 238.2711,-1486.2748"
/>
</g>
<!-- 14->12 -->
<g
id=
"edge20"
class=
"edge"
>
<title>
14
->
12
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M272.2055,-1511.8314C270.1511,-1504.0463 267.704,-1494.7729 265.4244,-1486.1347"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"268.7948,-1485.1892 262.8591,-1476.4133 262.0265,-1486.9753 268.7948,-1485.1892"
/>
</g>
<!-- 15 -->
<g
id=
"node16"
class=
"node"
>
<title>
15
</title>
<path
fill=
"none"
stroke=
"#56a9d8"
stroke-width=
"2"
d=
"M214.5,-108C214.5,-108 157.5,-108 157.5,-108 151.5,-108 145.5,-102 145.5,-96 145.5,-96 145.5,-84 145.5,-84 145.5,-78 151.5,-72 157.5,-72 157.5,-72 214.5,-72 214.5,-72 220.5,-72 226.5,-78 226.5,-84 226.5,-84 226.5,-96 226.5,-96 226.5,-102 220.5,-108 214.5,-108"
/>
<text
text-anchor=
"middle"
x=
"186"
y=
"-87.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
iso_anno_final
</text>
</g>
<!-- 15->0 -->
<g
id=
"edge3"
class=
"edge"
>
<title>
15
->
0
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M226.5405,-77.315C232.7088,-75.4769 239.012,-73.6504 245,-72 308.6092,-54.4686 383.3556,-36.6223 427.0238,-26.47"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"427.9533,-29.8474 436.9054,-24.1808 426.3734,-23.028 427.9533,-29.8474"
/>
</g>
<!-- 16 -->
<g
id=
"node17"
class=
"node"
>
<title>
16
</title>
<path
fill=
"none"
stroke=
"#d89c56"
stroke-width=
"2"
d=
"M217,-180C217,-180 149,-180 149,-180 143,-180 137,-174 137,-168 137,-168 137,-156 137,-156 137,-150 143,-144 149,-144 149,-144 217,-144 217,-144 223,-144 229,-150 229,-156 229,-156 229,-168 229,-168 229,-174 223,-180 217,-180"
/>
<text
text-anchor=
"middle"
x=
"183"
y=
"-159.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
iso_anno_concat
</text>
</g>
<!-- 16->15 -->
<g
id=
"edge23"
class=
"edge"
>
<title>
16
->
15
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M183.757,-143.8314C184.0779,-136.131 184.4594,-126.9743 184.816,-118.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"188.3133,-118.5503 185.2328,-108.4133 181.3194,-118.2589 188.3133,-118.5503"
/>
</g>
<!-- 17 -->
<g
id=
"node18"
class=
"node"
>
<title>
17
</title>
<path
fill=
"none"
stroke=
"#d86e56"
stroke-width=
"2"
d=
"M218,-252C218,-252 144,-252 144,-252 138,-252 132,-246 132,-240 132,-240 132,-228 132,-228 132,-222 138,-216 144,-216 144,-216 218,-216 218,-216 224,-216 230,-222 230,-228 230,-228 230,-240 230,-240 230,-246 224,-252 218,-252"
/>
<text
text-anchor=
"middle"
x=
"181"
y=
"-231.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
iso_anno_rename
</text>
</g>
<!-- 17->16 -->
<g
id=
"edge24"
class=
"edge"
>
<title>
17
->
16
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M181.5047,-215.8314C181.7186,-208.131 181.9729,-198.9743 182.2106,-190.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"185.7094,-190.5066 182.4885,-180.4133 178.7121,-190.3122 185.7094,-190.5066"
/>
</g>
<!-- 18 -->
<g
id=
"node19"
class=
"node"
>
<title>
18
</title>
<path
fill=
"none"
stroke=
"#56d863"
stroke-width=
"2"
d=
"M195.5,-324C195.5,-324 162.5,-324 162.5,-324 156.5,-324 150.5,-318 150.5,-312 150.5,-312 150.5,-300 150.5,-300 150.5,-294 156.5,-288 162.5,-288 162.5,-288 195.5,-288 195.5,-288 201.5,-288 207.5,-294 207.5,-300 207.5,-300 207.5,-312 207.5,-312 207.5,-318 201.5,-324 195.5,-324"
/>
<text
text-anchor=
"middle"
x=
"179"
y=
"-303.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
iso_anno
</text>
</g>
<!-- 18->17 -->
<g
id=
"edge25"
class=
"edge"
>
<title>
18
->
17
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M179.5047,-287.8314C179.7186,-280.131 179.9729,-270.9743 180.2106,-262.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"183.7094,-262.5066 180.4885,-252.4133 176.7121,-262.3122 183.7094,-262.5066"
/>
</g>
<!-- 19->18 -->
<g
id=
"edge26"
class=
"edge"
>
<title>
19
->
18
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M179,-359.8314C179,-352.131 179,-342.9743 179,-334.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"182.5001,-334.4132 179,-324.4133 175.5001,-334.4133 182.5001,-334.4132"
/>
</g>
<!-- 20 -->
<g
id=
"node21"
class=
"node"
>
<title>
20
</title>
<path
fill=
"none"
stroke=
"#56d8d8"
stroke-width=
"2"
d=
"M84,-972C84,-972 20,-972 20,-972 14,-972 8,-966 8,-960 8,-960 8,-948 8,-948 8,-942 14,-936 20,-936 20,-936 84,-936 84,-936 90,-936 96,-942 96,-948 96,-948 96,-960 96,-960 96,-966 90,-972 84,-972"
/>
<text
text-anchor=
"middle"
x=
"52"
y=
"-951.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
extract_chr_len
</text>
</g>
<!-- 20->18 -->
<g
id=
"edge27"
class=
"edge"
>
<title>
20
->
18
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M52,-935.8146C52,-908.4983 52,-855.25 52,-810 52,-810 52,-810 52,-666 52,-526.8726 47.749,-480.0885 118,-360 124.4722,-348.9363 134.0065,-338.9386 143.6238,-330.6386"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"146.1241,-333.1156 151.6564,-324.0798 141.6969,-327.6934 146.1241,-333.1156"
/>
</g>
<!-- 21->20 -->
<g
id=
"edge29"
class=
"edge"
>
<title>
21
->
20
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M52,-1223.9843C52,-1175.2939 52,-1040.7961 52,-982.0573"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"55.5001,-982.0088 52,-972.0089 48.5001,-982.0089 55.5001,-982.0088"
/>
</g>
<!-- 22 -->
<g
id=
"node23"
class=
"node"
>
<title>
22
</title>
<path
fill=
"none"
stroke=
"#d8bc56"
stroke-width=
"2"
d=
"M497.5,-324C497.5,-324 454.5,-324 454.5,-324 448.5,-324 442.5,-318 442.5,-312 442.5,-312 442.5,-300 442.5,-300 442.5,-294 448.5,-288 454.5,-288 454.5,-288 497.5,-288 497.5,-288 503.5,-288 509.5,-294 509.5,-300 509.5,-300 509.5,-312 509.5,-312 509.5,-318 503.5,-324 497.5,-324"
/>
<text
text-anchor=
"middle"
x=
"476"
y=
"-303.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
index_bam
</text>
</g>
<!-- 22->0 -->
<g
id=
"edge6"
class=
"edge"
>
<title>
22
->
0
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M477.8348,-287.9537C481.4459,-248.5016 488.1229,-151.7242 476,-72 474.7209,-63.5884 472.89,-54.5316 471.0423,-46.2835"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"474.4122,-45.3222 468.7333,-36.3778 467.5949,-46.9113 474.4122,-45.3222"
/>
</g>
<!-- 23 -->
<g
id=
"node24"
class=
"node"
>
<title>
23
</title>
<path
fill=
"none"
stroke=
"#565bd8"
stroke-width=
"2"
d=
"M437,-468C437,-468 369,-468 369,-468 363,-468 357,-462 357,-456 357,-456 357,-444 357,-444 357,-438 363,-432 369,-432 369,-432 437,-432 437,-432 443,-432 449,-438 449,-444 449,-444 449,-456 449,-456 449,-462 443,-468 437,-468"
/>
<text
text-anchor=
"middle"
x=
"403"
y=
"-447.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
sort_by_position
</text>
</g>
<!-- 23->22 -->
<g
id=
"edge31"
class=
"edge"
>
<title>
23
->
22
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M412.2455,-431.7623C424.8612,-406.8764 447.5694,-362.0822 462.2028,-333.2165"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"465.4297,-334.5916 466.8296,-324.0896 459.1861,-331.4264 465.4297,-334.5916"
/>
</g>
<!-- 54 -->
<g
id=
"node55"
class=
"node"
>
<title>
54
</title>
<path
fill=
"none"
stroke=
"#56c9d8"
stroke-width=
"2"
d=
"M401.5,-396C401.5,-396 360.5,-396 360.5,-396 354.5,-396 348.5,-390 348.5,-384 348.5,-384 348.5,-372 348.5,-372 348.5,-366 354.5,-360 360.5,-360 360.5,-360 401.5,-360 401.5,-360 407.5,-360 413.5,-366 413.5,-372 413.5,-372 413.5,-384 413.5,-384 413.5,-390 407.5,-396 401.5,-396"
/>
<text
text-anchor=
"middle"
x=
"381"
y=
"-375.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
bamtobed
</text>
</g>
<!-- 23->54 -->
<g
id=
"edge77"
class=
"edge"
>
<title>
23
->
54
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M397.4485,-431.8314C395.0697,-424.0463 392.2362,-414.7729 389.5967,-406.1347"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"392.8958,-404.954 386.6263,-396.4133 386.2013,-406.9996 392.8958,-404.954"
/>
</g>
<!-- 24 -->
<g
id=
"node25"
class=
"node"
>
<title>
24
</title>
<path
fill=
"none"
stroke=
"#56d8c1"
stroke-width=
"2"
d=
"M437,-540C437,-540 369,-540 369,-540 363,-540 357,-534 357,-528 357,-528 357,-516 357,-516 357,-510 363,-504 369,-504 369,-504 437,-504 437,-504 443,-504 449,-510 449,-516 449,-516 449,-528 449,-528 449,-534 443,-540 437,-540"
/>
<text
text-anchor=
"middle"
x=
"403"
y=
"-519.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
convert_to_bam
</text>
</g>
<!-- 24->23 -->
<g
id=
"edge32"
class=
"edge"
>
<title>
24
->
23
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M403,-503.8314C403,-496.131 403,-486.9743 403,-478.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"406.5001,-478.4132 403,-468.4133 399.5001,-478.4133 406.5001,-478.4132"
/>
</g>
<!-- 25 -->
<g
id=
"node26"
class=
"node"
>
<title>
25
</title>
<path
fill=
"none"
stroke=
"#56d8a2"
stroke-width=
"2"
d=
"M439,-612C439,-612 367,-612 367,-612 361,-612 355,-606 355,-600 355,-600 355,-588 355,-588 355,-582 361,-576 367,-576 367,-576 439,-576 439,-576 445,-576 451,-582 451,-588 451,-588 451,-600 451,-600 451,-606 445,-612 439,-612"
/>
<text
text-anchor=
"middle"
x=
"403"
y=
"-591.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
uncollapse_reads
</text>
</g>
<!-- 25->24 -->
<g
id=
"edge33"
class=
"edge"
>
<title>
25
->
24
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M403,-575.8314C403,-568.131 403,-558.9743 403,-550.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"406.5001,-550.4132 403,-540.4133 399.5001,-550.4133 406.5001,-550.4132"
/>
</g>
<!-- 26 -->
<g
id=
"node27"
class=
"node"
>
<title>
26
</title>
<path
fill=
"none"
stroke=
"#5692d8"
stroke-width=
"2"
d=
"M440,-684C440,-684 366,-684 366,-684 360,-684 354,-678 354,-672 354,-672 354,-660 354,-660 354,-654 360,-648 366,-648 366,-648 440,-648 440,-648 446,-648 452,-654 452,-660 452,-660 452,-672 452,-672 452,-678 446,-684 440,-684"
/>
<text
text-anchor=
"middle"
x=
"403"
y=
"-663.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
remove_inferiors
</text>
</g>
<!-- 26->25 -->
<g
id=
"edge34"
class=
"edge"
>
<title>
26
->
25
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M403,-647.8314C403,-640.131 403,-630.9743 403,-622.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"406.5001,-622.4132 403,-612.4133 399.5001,-622.4133 406.5001,-622.4132"
/>
</g>
<!-- 27 -->
<g
id=
"node28"
class=
"node"
>
<title>
27
</title>
<path
fill=
"none"
stroke=
"#afd856"
stroke-width=
"2"
d=
"M418,-756C418,-756 388,-756 388,-756 382,-756 376,-750 376,-744 376,-744 376,-732 376,-732 376,-726 382,-720 388,-720 388,-720 418,-720 418,-720 424,-720 430,-726 430,-732 430,-732 430,-744 430,-744 430,-750 424,-756 418,-756"
/>
<text
text-anchor=
"middle"
x=
"403"
y=
"-735.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
sort_id
</text>
</g>
<!-- 27->26 -->
<g
id=
"edge35"
class=
"edge"
>
<title>
27
->
26
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M403,-719.8314C403,-712.131 403,-702.9743 403,-694.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"406.5001,-694.4132 403,-684.4133 399.5001,-694.4133 406.5001,-694.4132"
/>
</g>
<!-- 28->27 -->
<g
id=
"edge36"
class=
"edge"
>
<title>
28
->
27
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M403,-791.8314C403,-784.131 403,-774.9743 403,-766.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"406.5001,-766.4132 403,-756.4133 399.5001,-766.4133 406.5001,-766.4132"
/>
</g>
<!-- 29 -->
<g
id=
"node30"
class=
"node"
>
<title>
29
</title>
<path
fill=
"none"
stroke=
"#70d856"
stroke-width=
"2"
d=
"M433.5,-900C433.5,-900 382.5,-900 382.5,-900 376.5,-900 370.5,-894 370.5,-888 370.5,-888 370.5,-876 370.5,-876 370.5,-870 376.5,-864 382.5,-864 382.5,-864 433.5,-864 433.5,-864 439.5,-864 445.5,-870 445.5,-876 445.5,-876 445.5,-888 445.5,-888 445.5,-894 439.5,-900 433.5,-900"
/>
<text
text-anchor=
"middle"
x=
"408"
y=
"-879.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
cat_mapping
</text>
</g>
<!-- 29->28 -->
<g
id=
"edge38"
class=
"edge"
>
<title>
29
->
28
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M406.7383,-863.8314C406.2035,-856.131 405.5677,-846.9743 404.9734,-838.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"408.4632,-838.1467 404.2787,-828.4133 401.48,-838.6317 408.4632,-838.1467"
/>
</g>
<!-- 30->29 -->
<g
id=
"edge39"
class=
"edge"
>
<title>
30
->
29
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M717.4283,-946.0196C653.3338,-932.7587 525.0785,-906.2231 455.5104,-891.8297"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"456.1884,-888.396 445.6867,-889.7972 454.7701,-895.2508 456.1884,-888.396"
/>
</g>
<!-- 31 -->
<g
id=
"node32"
class=
"node"
>
<title>
31
</title>
<path
fill=
"none"
stroke=
"#a7d856"
stroke-width=
"2"
d=
"M827.5,-1044C827.5,-1044 684.5,-1044 684.5,-1044 678.5,-1044 672.5,-1038 672.5,-1032 672.5,-1032 672.5,-1020 672.5,-1020 672.5,-1014 678.5,-1008 684.5,-1008 684.5,-1008 827.5,-1008 827.5,-1008 833.5,-1008 839.5,-1014 839.5,-1020 839.5,-1020 839.5,-1032 839.5,-1032 839.5,-1038 833.5,-1044 827.5,-1044"
/>
<text
text-anchor=
"middle"
x=
"756"
y=
"-1023.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
remove_headers_transcriptome
</text>
</g>
<!-- 31->30 -->
<g
id=
"edge41"
class=
"edge"
>
<title>
31
->
30
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M756,-1007.8314C756,-1000.131 756,-990.9743 756,-982.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"759.5001,-982.4132 756,-972.4133 752.5001,-982.4133 759.5001,-982.4132"
/>
</g>
<!-- 32 -->
<g
id=
"node33"
class=
"node"
>
<title>
32
</title>
<path
fill=
"none"
stroke=
"#569ad8"
stroke-width=
"2"
d=
"M807,-1116C807,-1116 705,-1116 705,-1116 699,-1116 693,-1110 693,-1104 693,-1104 693,-1092 693,-1092 693,-1086 699,-1080 705,-1080 705,-1080 807,-1080 807,-1080 813,-1080 819,-1086 819,-1092 819,-1092 819,-1104 819,-1104 819,-1110 813,-1116 807,-1116"
/>
<text
text-anchor=
"middle"
x=
"756"
y=
"-1095.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
filter_nh_transcriptome
</text>
</g>
<!-- 32->31 -->
<g
id=
"edge43"
class=
"edge"
>
<title>
32
->
31
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M756,-1079.8314C756,-1072.131 756,-1062.9743 756,-1054.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"759.5001,-1054.4132 756,-1044.4133 752.5001,-1054.4133 759.5001,-1054.4132"
/>
</g>
<!-- 33 -->
<g
id=
"node34"
class=
"node"
>
<title>
33
</title>
<path
fill=
"none"
stroke=
"#566bd8"
stroke-width=
"2"
d=
"M818,-1188C818,-1188 694,-1188 694,-1188 688,-1188 682,-1182 682,-1176 682,-1176 682,-1164 682,-1164 682,-1158 688,-1152 694,-1152 694,-1152 818,-1152 818,-1152 824,-1152 830,-1158 830,-1164 830,-1164 830,-1176 830,-1176 830,-1182 824,-1188 818,-1188"
/>
<text
text-anchor=
"middle"
x=
"756"
y=
"-1167.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
merge_transcriptome_maps
</text>
</g>
<!-- 33->32 -->
<g
id=
"edge44"
class=
"edge"
>
<title>
33
->
32
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M756,-1151.8314C756,-1144.131 756,-1134.9743 756,-1126.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"759.5001,-1126.4132 756,-1116.4133 752.5001,-1126.4133 759.5001,-1126.4132"
/>
</g>
<!-- 34->33 -->
<g
id=
"edge45"
class=
"edge"
>
<title>
34
->
33
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M852.0684,-1295.7623C832.8104,-1270.5518 797.9454,-1224.9103 775.9338,-1196.0952"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"778.6703,-1193.9117 769.8185,-1188.0896 773.1075,-1198.161 778.6703,-1193.9117"
/>
</g>
<!-- 35 -->
<g
id=
"node36"
class=
"node"
>
<title>
35
</title>
<path
fill=
"none"
stroke=
"#56d0d8"
stroke-width=
"2"
d=
"M679.5,-1548C679.5,-1548 618.5,-1548 618.5,-1548 612.5,-1548 606.5,-1542 606.5,-1536 606.5,-1536 606.5,-1524 606.5,-1524 606.5,-1518 612.5,-1512 618.5,-1512 618.5,-1512 679.5,-1512 679.5,-1512 685.5,-1512 691.5,-1518 691.5,-1524 691.5,-1524 691.5,-1536 691.5,-1536 691.5,-1542 685.5,-1548 679.5,-1548"
/>
<text
text-anchor=
"middle"
x=
"649"
y=
"-1527.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
fastx_collapser
</text>
</g>
<!-- 35->34 -->
<g
id=
"edge47"
class=
"edge"
>
<title>
35
->
34
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M677.2267,-1511.9229C691.8001,-1502.0446 709.5126,-1489.1635 724,-1476 737.0022,-1464.1859 807.411,-1382.4476 843.9555,-1339.7906"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"846.7299,-1341.9317 850.5748,-1332.0591 841.4125,-1337.3791 846.7299,-1341.9317"
/>
</g>
<!-- 41 -->
<g
id=
"node42"
class=
"node"
>
<title>
41
</title>
<path
fill=
"none"
stroke=
"#5682d8"
stroke-width=
"2"
d=
"M703,-1476C703,-1476 595,-1476 595,-1476 589,-1476 583,-1470 583,-1464 583,-1464 583,-1452 583,-1452 583,-1446 589,-1440 595,-1440 595,-1440 703,-1440 703,-1440 709,-1440 715,-1446 715,-1452 715,-1452 715,-1464 715,-1464 715,-1470 709,-1476 703,-1476"
/>
<text
text-anchor=
"middle"
x=
"649"
y=
"-1455.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
filter_fasta_for_oligomap
</text>
</g>
<!-- 35->41 -->
<g
id=
"edge57"
class=
"edge"
>
<title>
35
->
41
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M649,-1511.8314C649,-1504.131 649,-1494.9743 649,-1486.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"652.5001,-1486.4132 649,-1476.4133 645.5001,-1486.4133 652.5001,-1486.4132"
/>
</g>
<!-- 35->46 -->
<g
id=
"edge64"
class=
"edge"
>
<title>
35
->
46
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M606.4082,-1515.6028C575.6693,-1505.2122 533.6588,-1491.0114 499.0422,-1479.31"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"500.0843,-1475.9678 489.4901,-1476.0811 497.8426,-1482.5992 500.0843,-1475.9678"
/>
</g>
<!-- 36 -->
<g
id=
"node37"
class=
"node"
>
<title>
36
</title>
<path
fill=
"none"
stroke=
"#d87d56"
stroke-width=
"2"
d=
"M665.5,-1620C665.5,-1620 632.5,-1620 632.5,-1620 626.5,-1620 620.5,-1614 620.5,-1608 620.5,-1608 620.5,-1596 620.5,-1596 620.5,-1590 626.5,-1584 632.5,-1584 632.5,-1584 665.5,-1584 665.5,-1584 671.5,-1584 677.5,-1590 677.5,-1596 677.5,-1596 677.5,-1608 677.5,-1608 677.5,-1614 671.5,-1620 665.5,-1620"
/>
<text
text-anchor=
"middle"
x=
"649"
y=
"-1599.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
cutadapt
</text>
</g>
<!-- 36->35 -->
<g
id=
"edge50"
class=
"edge"
>
<title>
36
->
35
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M649,-1583.8314C649,-1576.131 649,-1566.9743 649,-1558.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"652.5001,-1558.4132 649,-1548.4133 645.5001,-1558.4133 652.5001,-1558.4132"
/>
</g>
<!-- 37 -->
<g
id=
"node38"
class=
"node"
>
<title>
37
</title>
<path
fill=
"none"
stroke=
"#56d89a"
stroke-width=
"2"
d=
"M682,-1692C682,-1692 616,-1692 616,-1692 610,-1692 604,-1686 604,-1680 604,-1680 604,-1668 604,-1668 604,-1662 610,-1656 616,-1656 616,-1656 682,-1656 682,-1656 688,-1656 694,-1662 694,-1668 694,-1668 694,-1680 694,-1680 694,-1686 688,-1692 682,-1692"
/>
<text
text-anchor=
"middle"
x=
"649"
y=
"-1671.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
fasta_formatter
</text>
</g>
<!-- 37->36 -->
<g
id=
"edge51"
class=
"edge"
>
<title>
37
->
36
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M649,-1655.8314C649,-1648.131 649,-1638.9743 649,-1630.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"652.5001,-1630.4132 649,-1620.4133 645.5001,-1630.4133 652.5001,-1630.4132"
/>
</g>
<!-- 38 -->
<g
id=
"node39"
class=
"node"
>
<title>
38
</title>
<path
fill=
"none"
stroke=
"#56d8d0"
stroke-width=
"2"
d=
"M664,-1764C664,-1764 634,-1764 634,-1764 628,-1764 622,-1758 622,-1752 622,-1752 622,-1740 622,-1740 622,-1734 628,-1728 634,-1728 634,-1728 664,-1728 664,-1728 670,-1728 676,-1734 676,-1740 676,-1740 676,-1752 676,-1752 676,-1758 670,-1764 664,-1764"
/>
<text
text-anchor=
"middle"
x=
"649"
y=
"-1743.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
start
</text>
</g>
<!-- 38->37 -->
<g
id=
"edge52"
class=
"edge"
>
<title>
38
->
37
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M649,-1727.8314C649,-1720.131 649,-1710.9743 649,-1702.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"652.5001,-1702.4132 649,-1692.4133 645.5001,-1702.4133 652.5001,-1702.4132"
/>
</g>
<!-- 39 -->
<g
id=
"node40"
class=
"node"
>
<title>
39
</title>
<path
fill=
"none"
stroke=
"#97d856"
stroke-width=
"2"
d=
"M752.5,-1260C752.5,-1260 611.5,-1260 611.5,-1260 605.5,-1260 599.5,-1254 599.5,-1248 599.5,-1248 599.5,-1236 599.5,-1236 599.5,-1230 605.5,-1224 611.5,-1224 611.5,-1224 752.5,-1224 752.5,-1224 758.5,-1224 764.5,-1230 764.5,-1236 764.5,-1236 764.5,-1248 764.5,-1248 764.5,-1254 758.5,-1260 752.5,-1260"
/>
<text
text-anchor=
"middle"
x=
"682"
y=
"-1239.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
oligomap_transcriptome_toSAM
</text>
</g>
<!-- 39->33 -->
<g
id=
"edge46"
class=
"edge"
>
<title>
39
->
33
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M700.6733,-1223.8314C709.5249,-1215.219 720.2486,-1204.7851 729.8895,-1195.4048"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"732.6061,-1197.645 737.3326,-1188.1628 727.7246,-1192.6279 732.6061,-1197.645"
/>
</g>
<!-- 40->39 -->
<g
id=
"edge54"
class=
"edge"
>
<title>
40
->
39
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M627.0391,-1367.862C615.446,-1358.6621 603.2598,-1346.3809 597,-1332 590.6142,-1317.3296 589.2953,-1310.0228 597,-1296 603.91,-1283.4235 615.1267,-1273.3606 627.1782,-1265.4922"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"629.2922,-1268.3047 636.0514,-1260.1461 625.6797,-1262.3089 629.2922,-1268.3047"
/>
</g>
<!-- 42 -->
<g
id=
"node43"
class=
"node"
>
<title>
42
</title>
<path
fill=
"none"
stroke=
"#d89556"
stroke-width=
"2"
d=
"M746.5,-1332C746.5,-1332 617.5,-1332 617.5,-1332 611.5,-1332 605.5,-1326 605.5,-1320 605.5,-1320 605.5,-1308 605.5,-1308 605.5,-1302 611.5,-1296 617.5,-1296 617.5,-1296 746.5,-1296 746.5,-1296 752.5,-1296 758.5,-1302 758.5,-1308 758.5,-1308 758.5,-1320 758.5,-1320 758.5,-1326 752.5,-1332 746.5,-1332"
/>
<text
text-anchor=
"middle"
x=
"682"
y=
"-1311.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
sort_transcriptome_oligomap
</text>
</g>
<!-- 40->42 -->
<g
id=
"edge58"
class=
"edge"
>
<title>
40
->
42
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M661.8132,-1367.8314C664.7644,-1359.9617 668.2858,-1350.5712 671.555,-1341.8533"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"674.8609,-1343.0055 675.095,-1332.4133 668.3066,-1340.5476 674.8609,-1343.0055"
/>
</g>
<!-- 41->40 -->
<g
id=
"edge55"
class=
"edge"
>
<title>
41
->
40
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M650.5141,-1439.8314C651.1558,-1432.131 651.9188,-1422.9743 652.6319,-1414.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"656.1229,-1414.6694 653.4656,-1404.4133 649.1471,-1414.088 656.1229,-1414.6694"
/>
</g>
<!-- 41->48 -->
<g
id=
"edge68"
class=
"edge"
>
<title>
41
->
48
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M593.7687,-1439.9243C563.4319,-1429.9959 525.6335,-1417.6255 493.8945,-1407.2382"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"494.8467,-1403.8672 484.254,-1404.0831 492.6694,-1410.52 494.8467,-1403.8672"
/>
</g>
<!-- 42->39 -->
<g
id=
"edge53"
class=
"edge"
>
<title>
42
->
39
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M682,-1295.8314C682,-1288.131 682,-1278.9743 682,-1270.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"685.5001,-1270.4132 682,-1260.4133 678.5001,-1270.4133 685.5001,-1270.4132"
/>
</g>
<!-- 43 -->
<g
id=
"node44"
class=
"node"
>
<title>
43
</title>
<path
fill=
"none"
stroke=
"#d8d356"
stroke-width=
"2"
d=
"M466,-972C466,-972 350,-972 350,-972 344,-972 338,-966 338,-960 338,-960 338,-948 338,-948 338,-942 344,-936 350,-936 350,-936 466,-936 466,-936 472,-936 478,-942 478,-948 478,-948 478,-960 478,-960 478,-966 472,-972 466,-972"
/>
<text
text-anchor=
"middle"
x=
"408"
y=
"-951.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
remove_headers_genome
</text>
</g>
<!-- 43->29 -->
<g
id=
"edge40"
class=
"edge"
>
<title>
43
->
29
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M408,-935.8314C408,-928.131 408,-918.9743 408,-910.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"411.5001,-910.4132 408,-900.4133 404.5001,-910.4133 411.5001,-910.4132"
/>
</g>
<!-- 44 -->
<g
id=
"node45"
class=
"node"
>
<title>
44
</title>
<path
fill=
"none"
stroke=
"#68d856"
stroke-width=
"2"
d=
"M445.5,-1116C445.5,-1116 370.5,-1116 370.5,-1116 364.5,-1116 358.5,-1110 358.5,-1104 358.5,-1104 358.5,-1092 358.5,-1092 358.5,-1086 364.5,-1080 370.5,-1080 370.5,-1080 445.5,-1080 445.5,-1080 451.5,-1080 457.5,-1086 457.5,-1092 457.5,-1092 457.5,-1104 457.5,-1104 457.5,-1110 451.5,-1116 445.5,-1116"
/>
<text
text-anchor=
"middle"
x=
"408"
y=
"-1095.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
nh_filter_genome
</text>
</g>
<!-- 44->43 -->
<g
id=
"edge59"
class=
"edge"
>
<title>
44
->
43
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M408,-1079.7623C408,-1055.201 408,-1011.2474 408,-982.3541"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"411.5001,-982.0896 408,-972.0896 404.5001,-982.0897 411.5001,-982.0896"
/>
</g>
<!-- 45 -->
<g
id=
"node46"
class=
"node"
>
<title>
45
</title>
<path
fill=
"none"
stroke=
"#56a2d8"
stroke-width=
"2"
d=
"M456.5,-1188C456.5,-1188 359.5,-1188 359.5,-1188 353.5,-1188 347.5,-1182 347.5,-1176 347.5,-1176 347.5,-1164 347.5,-1164 347.5,-1158 353.5,-1152 359.5,-1152 359.5,-1152 456.5,-1152 456.5,-1152 462.5,-1152 468.5,-1158 468.5,-1164 468.5,-1164 468.5,-1176 468.5,-1176 468.5,-1182 462.5,-1188 456.5,-1188"
/>
<text
text-anchor=
"middle"
x=
"408"
y=
"-1167.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
merge_genome_maps
</text>
</g>
<!-- 45->44 -->
<g
id=
"edge60"
class=
"edge"
>
<title>
45
->
44
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M408,-1151.8314C408,-1144.131 408,-1134.9743 408,-1126.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"411.5001,-1126.4132 408,-1116.4133 404.5001,-1126.4133 411.5001,-1126.4132"
/>
</g>
<!-- 46->45 -->
<g
id=
"edge61"
class=
"edge"
>
<title>
46
->
45
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M387.4301,-1439.9133C371.5231,-1431.4865 355.5085,-1419.7574 346,-1404 304.6269,-1335.4368 302.6745,-1295.8662 338,-1224 343.8234,-1212.1528 353.6351,-1202.171 364.0978,-1194.1383"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"366.4445,-1196.7642 372.5646,-1188.1158 362.3871,-1191.0601 366.4445,-1196.7642"
/>
</g>
<!-- 47 -->
<g
id=
"node48"
class=
"node"
>
<title>
47
</title>
<path
fill=
"none"
stroke=
"#b6d856"
stroke-width=
"2"
d=
"M473,-1260C473,-1260 359,-1260 359,-1260 353,-1260 347,-1254 347,-1248 347,-1248 347,-1236 347,-1236 347,-1230 353,-1224 359,-1224 359,-1224 473,-1224 473,-1224 479,-1224 485,-1230 485,-1236 485,-1236 485,-1248 485,-1248 485,-1254 479,-1260 473,-1260"
/>
<text
text-anchor=
"middle"
x=
"416"
y=
"-1239.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
oligomap_genome_toSAM
</text>
</g>
<!-- 47->45 -->
<g
id=
"edge62"
class=
"edge"
>
<title>
47
->
45
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M413.9813,-1223.8314C413.1257,-1216.131 412.1083,-1206.9743 411.1574,-1198.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"414.6289,-1197.9656 410.0459,-1188.4133 407.6717,-1198.7386 414.6289,-1197.9656"
/>
</g>
<!-- 48->47 -->
<g
id=
"edge67"
class=
"edge"
>
<title>
48
->
47
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M403.9572,-1367.8695C393.188,-1358.5148 381.7654,-1346.105 376,-1332 369.9462,-1317.1895 370.9856,-1311.1939 376,-1296 379.2908,-1286.0288 385.2116,-1276.3944 391.5064,-1268.0924"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"394.2672,-1270.2448 397.8424,-1260.2714 388.828,-1265.8384 394.2672,-1270.2448"
/>
</g>
<!-- 49 -->
<g
id=
"node50"
class=
"node"
>
<title>
49
</title>
<path
fill=
"none"
stroke=
"#56b1d8"
stroke-width=
"2"
d=
"M499,-1332C499,-1332 397,-1332 397,-1332 391,-1332 385,-1326 385,-1320 385,-1320 385,-1308 385,-1308 385,-1302 391,-1296 397,-1296 397,-1296 499,-1296 499,-1296 505,-1296 511,-1302 511,-1308 511,-1308 511,-1320 511,-1320 511,-1326 505,-1332 499,-1332"
/>
<text
text-anchor=
"middle"
x=
"448"
y=
"-1311.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
sort_genome_oligomap
</text>
</g>
<!-- 48->49 -->
<g
id=
"edge70"
class=
"edge"
>
<title>
48
->
49
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M433.7945,-1367.8314C435.8489,-1360.0463 438.296,-1350.7729 440.5756,-1342.1347"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"443.9735,-1342.9753 443.1409,-1332.4133 437.2052,-1341.1892 443.9735,-1342.9753"
/>
</g>
<!-- 49->47 -->
<g
id=
"edge66"
class=
"edge"
>
<title>
49
->
47
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M439.925,-1295.8314C436.3898,-1287.8771 432.164,-1278.369 428.2544,-1269.5723"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"431.4435,-1268.1299 424.1837,-1260.4133 425.0468,-1270.9729 431.4435,-1268.1299"
/>
</g>
<!-- 50 -->
<g
id=
"node51"
class=
"node"
>
<title>
50
</title>
<path
fill=
"none"
stroke=
"#d87556"
stroke-width=
"2"
d=
"M455,-108C455,-108 399,-108 399,-108 393,-108 387,-102 387,-96 387,-96 387,-84 387,-84 387,-78 393,-72 399,-72 399,-72 455,-72 455,-72 461,-72 467,-78 467,-84 467,-84 467,-96 467,-96 467,-102 461,-108 455,-108"
/>
<text
text-anchor=
"middle"
x=
"427"
y=
"-87.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
merge_tables
</text>
</g>
<!-- 50->0 -->
<g
id=
"edge2"
class=
"edge"
>
<title>
50
->
0
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M436.3367,-71.8314C440.4243,-63.8771 445.3104,-54.369 449.8309,-45.5723"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"453.0799,-46.9074 454.5376,-36.4133 446.8539,-43.7078 453.0799,-46.9074"
/>
</g>
<!-- 51 -->
<g
id=
"node52"
class=
"node"
>
<title>
51
</title>
<path
fill=
"none"
stroke=
"#568ad8"
stroke-width=
"2"
d=
"M350.5,-180C350.5,-180 299.5,-180 299.5,-180 293.5,-180 287.5,-174 287.5,-168 287.5,-168 287.5,-156 287.5,-156 287.5,-150 293.5,-144 299.5,-144 299.5,-144 350.5,-144 350.5,-144 356.5,-144 362.5,-150 362.5,-156 362.5,-156 362.5,-168 362.5,-168 362.5,-174 356.5,-180 350.5,-180"
/>
<text
text-anchor=
"middle"
x=
"325"
y=
"-159.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
quant_mirna
</text>
</g>
<!-- 51->50 -->
<g
id=
"edge72"
class=
"edge"
>
<title>
51
->
50
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M350.7389,-143.8314C363.5437,-134.7927 379.1909,-123.7476 392.9719,-114.0198"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"395.118,-116.7891 401.2693,-108.1628 391.0812,-111.0703 395.118,-116.7891"
/>
</g>
<!-- 52->51 -->
<g
id=
"edge73"
class=
"edge"
>
<title>
52
->
51
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M346.6821,-215.8314C343.5124,-207.9617 339.73,-198.5712 336.2187,-189.8533"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"339.3992,-188.3815 332.4165,-180.4133 332.9061,-190.9968 339.3992,-188.3815"
/>
</g>
<!-- 55 -->
<g
id=
"node56"
class=
"node"
>
<title>
55
</title>
<path
fill=
"none"
stroke=
"#80d856"
stroke-width=
"2"
d=
"M461,-180C461,-180 393,-180 393,-180 387,-180 381,-174 381,-168 381,-168 381,-156 381,-156 381,-150 387,-144 393,-144 393,-144 461,-144 461,-144 467,-144 473,-150 473,-156 473,-156 473,-168 473,-168 473,-174 467,-180 461,-180"
/>
<text
text-anchor=
"middle"
x=
"427"
y=
"-159.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
quant_mirna_pri
</text>
</g>
<!-- 52->55 -->
<g
id=
"edge78"
class=
"edge"
>
<title>
52
->
55
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M372.421,-215.8314C381.1529,-207.219 391.7317,-196.7851 401.2423,-187.4048"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"403.923,-189.6769 408.5849,-180.1628 399.0075,-184.6931 403.923,-189.6769"
/>
</g>
<!-- 53 -->
<g
id=
"node54"
class=
"node"
>
<title>
53
</title>
<path
fill=
"none"
stroke=
"#8fd856"
stroke-width=
"2"
d=
"M410.5,-324C410.5,-324 343.5,-324 343.5,-324 337.5,-324 331.5,-318 331.5,-312 331.5,-312 331.5,-300 331.5,-300 331.5,-294 337.5,-288 343.5,-288 343.5,-288 410.5,-288 410.5,-288 416.5,-288 422.5,-294 422.5,-300 422.5,-300 422.5,-312 422.5,-312 422.5,-318 416.5,-324 410.5,-324"
/>
<text
text-anchor=
"middle"
x=
"377"
y=
"-303.5"
font-family=
"sans"
font-size=
"10.00"
fill=
"#000000"
>
sort_alignments
</text>
</g>
<!-- 53->52 -->
<g
id=
"edge75"
class=
"edge"
>
<title>
53
->
52
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M371.1961,-287.8314C368.7092,-280.0463 365.7469,-270.7729 362.9875,-262.1347"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"366.2591,-260.874 359.882,-252.4133 359.591,-263.0041 366.2591,-260.874"
/>
</g>
<!-- 54->53 -->
<g
id=
"edge76"
class=
"edge"
>
<title>
54
->
53
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M379.9906,-359.8314C379.5628,-352.131 379.0541,-342.9743 378.5787,-334.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"382.0724,-334.2037 378.023,-324.4133 375.0831,-334.592 382.0724,-334.2037"
/>
</g>
<!-- 55->50 -->
<g
id=
"edge71"
class=
"edge"
>
<title>
55
->
50
</title>
<path
fill=
"none"
stroke=
"#c0c0c0"
stroke-width=
"2"
d=
"M427,-143.8314C427,-136.131 427,-126.9743 427,-118.4166"
/>
<polygon
fill=
"#c0c0c0"
stroke=
"#c0c0c0"
stroke-width=
"2"
points=
"430.5001,-118.4132 427,-108.4133 423.5001,-118.4133 430.5001,-118.4132"
/>
</g>
</g>
</svg>
This diff is collapsed.
Click to expand it.
images/workflow_dag.svg
0 → 100644
+
1784
−
0
View file @
ee2df41f
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment