cluster.json

{
  "__default__" :
  {
    "queue": "6hours",
    "time": "05:00:00",
    "threads": "1",
    "mem": "4G",
    "name": "{rule}.{wildcards}",
    "out": "$PWD/logs/cluster_log/{rule}.{wildcards}-%j-%N.out"
  },
  "map_to_other_genes":
  {
    "time": "06:00:00",
    "threads":"8",
    "mem":"50G"
  },
  "map_to_transcripts":
  {
    "time": "06:00:00",
    "threads":"8",
    "mem":"50G"
  },
  "sam2bam_sort_and_index":
  {
    "time": "06:00:00",
    "threads":"1",
    "mem":"10G"
  }
}