Addition of output files in finish rule of process_data Snakefile

snakemake/process_data/Snakefile

 configfile: "config.yaml"
 #from snakemake.utils import listfiles
 
-localrules: finish, count_oligos
+localrules: finish
 
 ################################################################################
 ### Finish rule
@@ -9,13 +9,11 @@ localrules: finish, count_oligos
 
 rule finish:
 	input:
-		oligos_counts = expand(os.path.join(config["output_dir"], "{sample}", "oligos_counts.txt"), sample=config["sample"])
-
-
-		#pdf = expand(os.path.join(config["output_dir"], "{sample}/read_length/read_length_histogram.pdf"), sample=config["sample"]),
-		#counts = expand(os.path.join(config["output_dir"], "{sample}/counts.tsv"), sample=config["sample"]),
-		#bai = expand(os.path.join(config["output_dir"], "{sample}/transcripts.mapped.unique.a_site_profile.sorted.bam.bai"), sample=config["sample"]),
-		#overrepresented_sequences_counts = expand(os.path.join(config["output_dir"], "{sample}/overepressented_sequences_other.txt"), sample=config["sample"])
+		oligos_counts = expand(os.path.join(config["output_dir"], "{sample}", "oligos_counts.txt"), sample=config["sample"]),
+		pdf = expand(os.path.join(config["output_dir"], "{sample}/read_length/read_length_histogram.pdf"), sample=config["sample"]),
+		counts = expand(os.path.join(config["output_dir"], "{sample}/counts.tsv"), sample=config["sample"]),
+		bai = expand(os.path.join(config["output_dir"], "{sample}/transcripts.mapped.unique.a_site_profile.sorted.bam.bai"), sample=config["sample"]),
+		overrepresented_sequences_counts = expand(os.path.join(config["output_dir"], "{sample}/overepressented_sequences_other.txt"), sample=config["sample"])
 
 ################################################################################
 ### Count oligos