Change script that counts oligos. Fix wrongly replaced annotation in config files.

snakemake/prepare_annotation/config.yaml

snakemake/process_data/Snakefile

snakemake/process_data/config.yaml

snakemake/process_data/run_snakefile.sh

snakemake/process_data/scripts/count_oligos.py

snakemake/process_data/scripts/scanAdapter.sh

snakemake/process_data/scripts/xp-count-reads-ribseq.pl