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Commit 8e943c18 authored by Timon Baltisberger's avatar Timon Baltisberger
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fix: path names

parent b255c509
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1 merge request!15add: generate transcript structure
Pipeline #13634 passed
Stage: qc
Stage: test
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tests/test_transcript_structure.py
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"""Tests the transcript structure generator module."""
import pytest import pytest
from transcript_structure import Generate_transcript_structure as Gts from transcript_structure import Generate_transcript_structure as Gts
TEST_CSV_TITLE = './tests/resources/test_transcript_structure/Rik_5_Rp1_5_title.csv' TEST_CSV_TITLE = './tests/resources/test_transcript_structure/Rik_5_Rp1_5_title.csv'
TEST_CSV_NO_TITLE = './tests/resources/test_transcript_structure/Rik_5_Rp1_5_no_title.csv' TEST_CSV_NO_TITLE = './tests/resources/test_transcript_structure/Rik_5_Rp1_5_no_title.csv'
GENE_COORDS = './tests/resources/RP1_RIK.gtf' GENE_COORDS = './tests/resources/test_transcript_structure/RP1_RIK.gtf'
GENE_KEYS = ['Rp1', '1700034P13Rik'] GENE_KEYS = ['Rp1', '1700034P13Rik']
P_INTRON_0: float = 0 P_INTRON_0: float = 0
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