Commits · deep-learning · zavolan_group / pipelines / scRNA-seq-simulation

Dec 22, 2021
- style: missing docstring · 4aab8c7d
  TheRiPtide authored 3 years ago
  
  4aab8c7d
- Merge branch 'dl-onehot' into deep-learning · 2200b3f5
  TheRiPtide authored 3 years ago
  
  2200b3f5
- feat: Better visualizability of first convolutional layer with onehot encoding · c1c0b313
  TheRiPtide authored 3 years ago
  
  c1c0b313
- refactor: small changes to adjust style and format · 485bdca3
  TheRiPtide authored 3 years ago
  
  485bdca3
- fix: swap to onehot encoding started · 465fcb01
  TheRiPtide authored 3 years ago
  
  465fcb01
Dec 15, 2021
- patch: cli for poly(A) classifier and coverage exclusions · bcd472ba
  TheRiPtide authored 3 years ago
  
  bcd472ba
Dec 08, 2021
- fix: flake8 now again · 43303ee1
  TheRiPtide authored 3 years ago
  
  43303ee1
- fix: mypy now passes · 5eef04d8
  TheRiPtide authored 3 years ago
  
  5eef04d8
- fix: missing requirement · 728d941b
  TheRiPtide authored 3 years ago
  
  728d941b
- chore: flake8 · c70be5be
  TheRiPtide authored 3 years ago
  
  c70be5be
- chore: rebase conflict when pushing · 6d6f4480
  TheRiPtide authored 3 years ago
  
  6d6f4480
- patch: polyA classifier finished · f28b078c
  TheRiPtide authored 3 years ago
  
  f28b078c
- chore: again weird notebook · bb566328
  TheRiPtide authored 3 years ago
  
  bb566328
- chore: notebooks doing weird stuff when rebasing · 982b09c7
  TheRiPtide authored 3 years ago
  
  982b09c7
- patch: polyA classifier class ready for usage · 8481b753
  TheRiPtide authored 3 years ago
  
  8481b753
- chore: rebase 2 · be09c6ba
  TheRiPtide authored 3 years ago
  
  be09c6ba
- chore: rebase · 272419d9
  TheRiPtide authored 3 years ago
  
  272419d9
- chore: trained and saved model · af5a124a
  TheRiPtide authored 3 years ago
  
  af5a124a
- chore: added training function for cnn · 96fbed82
  TheRiPtide authored 3 years ago
  
  96fbed82
- chore: started cnn notebook · 1f63980c
  TheRiPtide authored 3 years ago
  
  1f63980c
- chore: updated gitignore to exclude pycharm settings · eb3806a7
  TheRiPtide authored 3 years ago
  
  eb3806a7
- chore: updated gitignore to exclude pycharm settings · e29f818e
  TheRiPtide authored 3 years ago
  
  e29f818e
Dec 07, 2021
- feat: add parameter class · 557be05b
  Michele Garioni authored 3 years ago and Alex Kanitz committed 3 years ago
  
  557be05b
Dec 01, 2021
- Merge branch 'deep-learning' of... · fb8e822e
  TheRiPtide authored 3 years ago
  fb8e822e
- patch: polyA classifier class ready for usage · b74927ad
  TheRiPtide authored 3 years ago
  
  b74927ad
- chore: rebase 2 · 05728f04
  TheRiPtide authored 3 years ago
  
  05728f04
- chore: rebase · 3fa94f50
  TheRiPtide authored 3 years ago
  
  3fa94f50
Nov 24, 2021
- chore: weird git issues · 0930cb20
  TheRiPtide authored 3 years ago
  
  0930cb20
- chore: trained and saved model · 24f52435
  TheRiPtide authored 3 years ago
  
  24f52435
- chore: added training function for cnn · 67e95d48
  TheRiPtide authored 3 years ago
  
  67e95d48
- chore: started cnn notebook · 035f5c9a
  TheRiPtide authored 3 years ago
  
  035f5c9a
- chore: updated gitignore to exclude pycharm settings · 93f1e520
  TheRiPtide authored 3 years ago
  
  93f1e520
- chore: updated gitignore to exclude pycharm settings · f7d9fe50
  TheRiPtide authored 3 years ago
  
  f7d9fe50
- test: add mock data for ML task · 95d07fbd
  MihaelaZavolan authored 3 years ago and Alex Kanitz committed 3 years ago
  
  95d07fbd
Nov 17, 2021
- feat: function to generate poly(A) tail sequence · 444cc961
  MihaelaZavolan authored 3 years ago and Alex Kanitz committed 3 years ago
  
  444cc961
- chore: added training function for cnn · 93ea3181
  TheRiPtide authored 3 years ago
  
  93ea3181
- chore: started cnn notebook · d2ef840c
  TheRiPtide authored 3 years ago
  
  d2ef840c
- chore: updated gitignore to exclude pycharm settings · d7b897f7
  TheRiPtide authored 3 years ago
  
  d7b897f7
- chore: updated gitignore to exclude pycharm settings · 51d613e8
  TheRiPtide authored 3 years ago
  
  51d613e8
- feat: add sampling from transcript file · e8f8acc9
  Michele Garioni authored 3 years ago
  
  e8f8acc9