feat: add function to calculate mean and variance

Add function to calculate mean and variance from a directory with files of gene expression(Work in progress)

requested review from @kanitz

assigned to @reto.tschannen

added 5 commits

• cd2c8690...95d07fbd - 2 commits from branch main
• 37aaef90 - feat: Added function to calculate mean and variance from a directory with...
• 283577f8 - chore: cleaned up function and added correct path to usr directory
• 91b98504 - chore: removed print line

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changed title from feat: Added function to calculate mean and variance from a directory with... to feat: add function to calculate mean and variance

changed the description

Please fix the linter issues (see CI log or just run flake8 locally in your checked out feature branch). Use Google to find out more about what the linter complains about. E.g., for src/mean-variance-function.py:1:12: E401 multiple imports on one line, googling E401 multiple imports on one line will bring you here: https://www.flake8rules.com/rules/E401.html

Please proceed in a similar way to make sure the entire CI pipeline passes, then please re-assing me to review. If you have any specific questions, please ask them during the session or on the forum on ADAM.

removed review request for @kanitz

added 5 commits

• 663d5b8f - feat: Added function to calculate mean and variance from a directory with...
• 58561bde - chore: cleaned up function and added correct path to usr directory
• cd2c8690 - chore: removed print line
• c4132770 - chore: completed CI corrections
• 467c45a1 - Merge branch 'issue12' of...

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Apart from the comments above, the CI pipeline failed with linter errors and there are no unit tests. Please fix linter and other CI errors, add unit tests that cover all of your code.

I can't resolve these flake8 issues, how can I fix them (My local flake8 shows no problems, but when I push, the qc fails because of them)?

$ flake8 src/ setup.py
src/meanvariancefunction.py:12:1: D205 1 blank line required between summary line and description
src/meanvariancefunction.py:12:1: D415 First line should end with a period, question mark, or exclamation point
src/meanvariancefunction.py:12:1: D411 Missing blank line before section

Best, Reto

Hi Reto Did you follow the instructions you actually get from running flake8 in the CI? You seem to miss some blank lines, punctuation marks, etc. You need a summary line (one line, ending with period, ? or !) then a blank line and then description.

I could resolve it now, but the last line was hard to locate, since it didn't show locally. Now only the tests are missing.

mentioned in merge request !16 (closed)