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    # General Notes for Maté and CJ
    ## things to check in the individual tool repos
    * [ ] is `main` the current branch (have all updates been merged)?
    * [ ] Are there open issues inside the tool repo?
    * [ ] is the tool executable?
    * [ ] are there sufficient tests?
    * [ ] does the tool work as expected?
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    * [ ] `.gitignore` extensive enough?
    ## Useful links
    * [uploading tools to Bioconda](https://git.scicore.unibas.ch/zavolan_group/teaching_and_tutorials/programming_for_life_sciences/-/blob/master/2022/04_encapsulation_packaging.ipynb#Creating-and-publishing-packages)
    * [uploading tools to Bioconda](https://bioconda.github.io/contributor/setup.html)
    * [Lecture on packaging](https://git.scicore.unibas.ch/zavolan_group/teaching_and_tutorials/programming_for_life_sciences/-/blob/master/2022/04_encapsulation_packaging.ipynb#Creating-and-publishing-packages)
    # Links to individual tools
    ## [Transcript sampler](https://git.scicore.unibas.ch/zavolan_group/tools/transcript-sampler)
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