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<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
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<!-- Title: snakemake_dag Pages: 1 -->
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<title>0</title>
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<text text-anchor="middle" x="1166" y="-15.5" font-family="sans" font-size="10.00" fill="#000000">finish</text>
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</g>
<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
<path fill="none" stroke="#56d863" stroke-width="2" d="M280,-108C280,-108 12,-108 12,-108 6,-108 0,-102 0,-96 0,-96 0,-84 0,-84 0,-78 6,-72 12,-72 12,-72 280,-72 280,-72 286,-72 292,-78 292,-84 292,-84 292,-96 292,-96 292,-102 286,-108 280,-108"/>
<text text-anchor="middle" x="146" y="-93" font-family="sans" font-size="10.00" fill="#000000">pe_fastqc</text>
<text text-anchor="middle" x="146" y="-82" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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</g>
<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M292.0103,-72.8245C295.0326,-72.5401 298.0318,-72.2648 301,-72 620.6922,-43.4788 1008.1917,-24.9957 1128.5335,-19.6246"/>
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</g>
<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
<path fill="none" stroke="#56d8d0" stroke-width="2" d="M602,-108C602,-108 322,-108 322,-108 316,-108 310,-102 310,-96 310,-96 310,-84 310,-84 310,-78 316,-72 322,-72 322,-72 602,-72 602,-72 608,-72 614,-78 614,-84 614,-84 614,-96 614,-96 614,-102 608,-108 602,-108"/>
<text text-anchor="middle" x="462" y="-93" font-family="sans" font-size="10.00" fill="#000000">fastqc</text>
<text text-anchor="middle" x="462" y="-82" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M614.4157,-73.4253C618.9948,-72.9426 623.5311,-72.4666 628,-72 816.1827,-52.3535 1041.5419,-30.1696 1128.8848,-21.6224"/>
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</g>
<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
<path fill="none" stroke="#56d8b9" stroke-width="2" d="M980.5,-180C980.5,-180 877.5,-180 877.5,-180 871.5,-180 865.5,-174 865.5,-168 865.5,-168 865.5,-156 865.5,-156 865.5,-150 871.5,-144 877.5,-144 877.5,-144 980.5,-144 980.5,-144 986.5,-144 992.5,-150 992.5,-156 992.5,-156 992.5,-168 992.5,-168 992.5,-174 986.5,-180 980.5,-180"/>
<text text-anchor="middle" x="929" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_quantification_salmon</text>
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</g>
<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M865.3527,-158.2313C794.421,-152.5464 686.3294,-138.9422 661,-108 650.8651,-95.6193 650.3047,-83.9 661,-72 692.19,-37.297 1017.0548,-23.0637 1128.6246,-19.175"/>
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<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M1304,-108C1304,-108 1192,-108 1192,-108 1186,-108 1180,-102 1180,-96 1180,-96 1180,-84 1180,-84 1180,-78 1186,-72 1192,-72 1192,-72 1304,-72 1304,-72 1310,-72 1316,-78 1316,-84 1316,-84 1316,-96 1316,-96 1316,-102 1310,-108 1304,-108"/>
<text text-anchor="middle" x="1248" y="-93" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1248" y="-82" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: tpm</text>
<g id="edge25" class="edge">
<title>3&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M992.574,-145.978C995.4196,-145.3014 998.2384,-144.6391 1001,-144 1075.8188,-126.6844 1095.0269,-124.6348 1170,-108 1170.1018,-107.9774 1170.2036,-107.9548 1170.3055,-107.9322"/>
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<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M803.5,-108C803.5,-108 682.5,-108 682.5,-108 676.5,-108 670.5,-102 670.5,-96 670.5,-96 670.5,-84 670.5,-84 670.5,-78 676.5,-72 682.5,-72 682.5,-72 803.5,-72 803.5,-72 809.5,-72 815.5,-78 815.5,-84 815.5,-84 815.5,-96 815.5,-96 815.5,-102 809.5,-108 803.5,-108"/>
<text text-anchor="middle" x="743" y="-93" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="743" y="-82" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: numreads</text>
<g id="edge27" class="edge">
<title>3&#45;&gt;10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M882.0643,-143.8314C856.8563,-134.0734 825.6074,-121.977 799.1209,-111.7242"/>
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<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#d8c356" stroke-width="2" d="M976.5,-108C976.5,-108 845.5,-108 845.5,-108 839.5,-108 833.5,-102 833.5,-96 833.5,-96 833.5,-84 833.5,-84 833.5,-78 839.5,-72 845.5,-72 845.5,-72 976.5,-72 976.5,-72 982.5,-72 988.5,-78 988.5,-84 988.5,-84 988.5,-96 988.5,-96 988.5,-102 982.5,-108 976.5,-108"/>
<text text-anchor="middle" x="911" y="-93" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="911" y="-82" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: tpm</text>
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<!-- 3&#45;&gt;11 -->
<g id="edge29" class="edge">
<title>3&#45;&gt;11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M924.4578,-143.8314C922.5116,-136.0463 920.1932,-126.7729 918.0337,-118.1347"/>
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<g id="node13" class="node">
<title>12</title>
<path fill="none" stroke="#d8c356" stroke-width="2" d="M1149.5,-108C1149.5,-108 1018.5,-108 1018.5,-108 1012.5,-108 1006.5,-102 1006.5,-96 1006.5,-96 1006.5,-84 1006.5,-84 1006.5,-78 1012.5,-72 1018.5,-72 1018.5,-72 1149.5,-72 1149.5,-72 1155.5,-72 1161.5,-78 1161.5,-84 1161.5,-84 1161.5,-96 1161.5,-96 1161.5,-102 1155.5,-108 1149.5,-108"/>
<text text-anchor="middle" x="1084" y="-93" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1084" y="-82" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: numreads</text>
</g>
<!-- 3&#45;&gt;12 -->
<g id="edge31" class="edge">
<title>3&#45;&gt;12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M968.113,-143.8314C988.7512,-134.2446 1014.2484,-122.4008 1036.0673,-112.2655"/>
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</g>
<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
<path fill="none" stroke="#56b1d8" stroke-width="2" d="M1109.5,-180C1109.5,-180 1022.5,-180 1022.5,-180 1016.5,-180 1010.5,-174 1010.5,-168 1010.5,-168 1010.5,-156 1010.5,-156 1010.5,-150 1016.5,-144 1022.5,-144 1022.5,-144 1109.5,-144 1109.5,-144 1115.5,-144 1121.5,-150 1121.5,-156 1121.5,-156 1121.5,-168 1121.5,-168 1121.5,-174 1115.5,-180 1109.5,-180"/>
<text text-anchor="middle" x="1066" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">quantification_salmon</text>
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</g>
<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1121.5883,-146.2651C1124.7656,-145.4722 1127.9194,-144.711 1131,-144 1173.7241,-134.1398 1296.9662,-141.7146 1325,-108 1362.7844,-62.559 1261.3527,-35.5901 1203.3308,-24.2747"/>
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<g id="edge26" class="edge">
<title>4&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1111.9263,-143.8314C1136.5923,-134.0734 1167.1691,-121.977 1193.086,-111.7242"/>
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<g id="edge28" class="edge">
<title>4&#45;&gt;10</title>
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<!-- 4&#45;&gt;11 -->
<g id="edge30" class="edge">
<title>4&#45;&gt;11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1026.887,-143.8314C1006.2488,-134.2446 980.7516,-122.4008 958.9327,-112.2655"/>
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<!-- 4&#45;&gt;12 -->
<g id="edge32" class="edge">
<title>4&#45;&gt;12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1070.5422,-143.8314C1072.4884,-136.0463 1074.8068,-126.7729 1076.9663,-118.1347"/>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
<path fill="none" stroke="#56c9d8" stroke-width="2" d="M1294,-180C1294,-180 1152,-180 1152,-180 1146,-180 1140,-174 1140,-168 1140,-168 1140,-156 1140,-156 1140,-150 1146,-144 1152,-144 1152,-144 1294,-144 1294,-144 1300,-144 1306,-150 1306,-156 1306,-156 1306,-168 1306,-168 1306,-174 1300,-180 1294,-180"/>
<text text-anchor="middle" x="1223" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_genome_quantification_kallisto</text>
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1306.0774,-146.1087C1326.3767,-138.1084 1345.7586,-126.081 1358,-108 1366.9701,-94.7509 1367.6615,-84.7536 1358,-72 1339.4067,-47.4559 1253.9804,-30.9519 1203.5562,-23.1627"/>
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</g>
<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
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<text text-anchor="middle" x="1399" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">genome_quantification_kallisto</text>
<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1399.4933,-143.8404C1399.0194,-123.5511 1395.0299,-91.0582 1376,-72 1351.9364,-47.9006 1256.9834,-30.8919 1203.3694,-22.9895"/>
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<g id="node8" class="node">
<title>7</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M1631,-108C1631,-108 1543,-108 1543,-108 1537,-108 1531,-102 1531,-96 1531,-96 1531,-84 1531,-84 1531,-78 1537,-72 1543,-72 1543,-72 1631,-72 1631,-72 1637,-72 1643,-78 1643,-84 1643,-84 1643,-96 1643,-96 1643,-102 1637,-108 1631,-108"/>
<text text-anchor="middle" x="1587" y="-93" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<text text-anchor="middle" x="1587" y="-82" font-family="sans" font-size="10.00" fill="#000000">seqmode: paired_end</text>
<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1530.6589,-80.3645C1443.3141,-65.4266 1277.5807,-37.0827 1203.4604,-24.4065"/>
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<g id="node9" class="node">
<title>8</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M1817,-108C1817,-108 1729,-108 1729,-108 1723,-108 1717,-102 1717,-96 1717,-96 1717,-84 1717,-84 1717,-78 1723,-72 1729,-72 1729,-72 1817,-72 1817,-72 1823,-72 1829,-78 1829,-84 1829,-84 1829,-96 1829,-96 1829,-102 1823,-108 1817,-108"/>
<text text-anchor="middle" x="1773" y="-93" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<text text-anchor="middle" x="1773" y="-82" font-family="sans" font-size="10.00" fill="#000000">seqmode: single_end</text>
<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1716.7318,-81.1874C1696.3622,-78.1141 1673.1665,-74.7493 1652,-72 1485.0195,-50.3108 1285.0455,-29.8148 1203.4405,-21.6829"/>
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<g id="edge9" class="edge">
<title>9&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1227.3079,-71.8314C1217.3052,-63.0485 1205.145,-52.3712 1194.3001,-42.8489"/>
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<g id="edge10" class="edge">
<title>10&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M815.8137,-73.5955C818.5749,-73.0445 821.311,-72.5106 824,-72 934.2562,-51.0658 1065.5934,-31.945 1128.6213,-23.1269"/>
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<!-- 11&#45;&gt;0 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M975.0181,-71.9243C1023.708,-58.1766 1088.9805,-39.7467 1129.2269,-28.383"/>
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<!-- 12&#45;&gt;0 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1104.6921,-71.8314C1114.6948,-63.0485 1126.855,-52.3712 1137.6999,-42.8489"/>
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<g id="node14" class="node">
<title>13</title>
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<text text-anchor="middle" x="1101" y="-306" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
<!-- 13&#45;&gt;3 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;3</title>
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<!-- 13&#45;&gt;5 -->
<g id="edge17" class="edge">
<title>13&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1116.2047,-290.2419C1137.6908,-264.4409 1177.0406,-217.189 1201.5078,-187.8083"/>
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<!-- 23 -->
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#d86e56" stroke-width="2" d="M1569.5,-252C1569.5,-252 1480.5,-252 1480.5,-252 1474.5,-252 1468.5,-246 1468.5,-240 1468.5,-240 1468.5,-228 1468.5,-228 1468.5,-222 1474.5,-216 1480.5,-216 1480.5,-216 1569.5,-216 1569.5,-216 1575.5,-216 1581.5,-222 1581.5,-228 1581.5,-228 1581.5,-240 1581.5,-240 1581.5,-246 1575.5,-252 1569.5,-252"/>
<text text-anchor="middle" x="1525" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">pe_map_genome_star</text>
<!-- 13&#45;&gt;23 -->
<g id="edge40" class="edge">
<title>13&#45;&gt;23</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1169.2893,-291.1449C1174.2568,-290.0326 1179.1991,-288.9712 1184,-288 1278.5777,-268.8678 1389.0545,-252.4437 1458.033,-242.8876"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1458.8912,-246.3025 1468.3201,-241.4708 1457.9361,-239.368 1458.8912,-246.3025"/>
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#d8b456" stroke-width="2" d="M1107.5,-252C1107.5,-252 1022.5,-252 1022.5,-252 1016.5,-252 1010.5,-246 1010.5,-240 1010.5,-240 1010.5,-228 1010.5,-228 1010.5,-222 1016.5,-216 1022.5,-216 1022.5,-216 1107.5,-216 1107.5,-216 1113.5,-216 1119.5,-222 1119.5,-228 1119.5,-228 1119.5,-240 1119.5,-240 1119.5,-246 1113.5,-252 1107.5,-252"/>
<text text-anchor="middle" x="1065" y="-237" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
<text text-anchor="middle" x="1065" y="-226" font-family="sans" font-size="10.00" fill="#000000">kmer: 31</text>
</g>
<!-- 14&#45;&gt;3 -->
<g id="edge14" class="edge">
<title>14&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1030.6815,-215.8314C1012.9641,-206.4516 991.1655,-194.9112 972.3016,-184.9244"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="973.7831,-181.7485 963.3076,-180.1628 970.5078,-187.935 973.7831,-181.7485"/>
</g>
<!-- 14&#45;&gt;4 -->
<g id="edge16" class="edge">
<title>14&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1065.2523,-215.8314C1065.3593,-208.131 1065.4865,-198.9743 1065.6053,-190.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1069.1049,-190.4609 1065.7443,-180.4133 1062.1056,-190.3637 1069.1049,-190.4609"/>
<g id="node16" class="node">
<title>15</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M1449,-326.5C1449,-326.5 1353,-326.5 1353,-326.5 1347,-326.5 1341,-320.5 1341,-314.5 1341,-314.5 1341,-302.5 1341,-302.5 1341,-296.5 1347,-290.5 1353,-290.5 1353,-290.5 1449,-290.5 1449,-290.5 1455,-290.5 1461,-296.5 1461,-302.5 1461,-302.5 1461,-314.5 1461,-314.5 1461,-320.5 1455,-326.5 1449,-326.5"/>
<text text-anchor="middle" x="1401" y="-306" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
</g>
<!-- 15&#45;&gt;4 -->
<g id="edge15" class="edge">
<title>15&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1340.9243,-291.6426C1285.695,-276.0737 1211.4147,-254.9235 1205,-252 1165.8152,-234.1413 1124.8978,-206.3691 1097.6905,-186.3986"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1099.4735,-183.3631 1089.3583,-180.2112 1095.3002,-188.9831 1099.4735,-183.3631"/>
</g>
<!-- 15&#45;&gt;6 -->
<g id="edge19" class="edge">
<title>15&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1400.7507,-290.2419C1400.4075,-265.1025 1399.7863,-219.5981 1399.3837,-190.1029"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1402.8824,-189.9793 1399.2461,-180.028 1395.883,-190.0749 1402.8824,-189.9793"/>
<!-- 24 -->
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#78d856" stroke-width="2" d="M1684.5,-252C1684.5,-252 1611.5,-252 1611.5,-252 1605.5,-252 1599.5,-246 1599.5,-240 1599.5,-240 1599.5,-228 1599.5,-228 1599.5,-222 1605.5,-216 1611.5,-216 1611.5,-216 1684.5,-216 1684.5,-216 1690.5,-216 1696.5,-222 1696.5,-228 1696.5,-228 1696.5,-240 1696.5,-240 1696.5,-246 1690.5,-252 1684.5,-252"/>
<text text-anchor="middle" x="1648" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
<!-- 15&#45;&gt;24 -->
<g id="edge42" class="edge">
<title>15&#45;&gt;24</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1461.4049,-290.8195C1496.4471,-280.4971 1541.6598,-267.068 1589.5811,-252.4162"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1590.6628,-255.7455 1599.1992,-249.4702 1588.6126,-249.0524 1590.6628,-255.7455"/>
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#a7d856" stroke-width="2" d="M1310,-252C1310,-252 1226,-252 1226,-252 1220,-252 1214,-246 1214,-240 1214,-240 1214,-228 1214,-228 1214,-222 1220,-216 1226,-216 1226,-216 1310,-216 1310,-216 1316,-216 1322,-222 1322,-228 1322,-228 1322,-240 1322,-240 1322,-246 1316,-252 1310,-252"/>
<text text-anchor="middle" x="1268" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
</g>
<!-- 16&#45;&gt;5 -->
<g id="edge18" class="edge">
<title>16&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1256.6446,-215.8314C1251.5674,-207.7079 1245.4773,-197.9637 1239.8824,-189.0118"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1242.7763,-187.0383 1234.5083,-180.4133 1236.8403,-190.7483 1242.7763,-187.0383"/>
</g>
<!-- 16&#45;&gt;6 -->
<g id="edge20" class="edge">
<title>16&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1301.0568,-215.8314C1317.9677,-206.5368 1338.7385,-195.1208 1356.7941,-185.1971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1358.876,-188.0468 1365.9537,-180.1628 1355.5043,-181.9122 1358.876,-188.0468"/>
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M1670,-180C1670,-180 1504,-180 1504,-180 1498,-180 1492,-174 1492,-168 1492,-168 1492,-156 1492,-156 1492,-150 1498,-144 1504,-144 1504,-144 1670,-144 1670,-144 1676,-144 1682,-150 1682,-156 1682,-156 1682,-168 1682,-168 1682,-174 1676,-180 1670,-180"/>
<text text-anchor="middle" x="1587" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_index_genomic_alignment_samtools</text>
<!-- 17&#45;&gt;7 -->
<g id="edge21" class="edge">
<title>17&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1587,-143.8314C1587,-136.131 1587,-126.9743 1587,-118.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1590.5001,-118.4132 1587,-108.4133 1583.5001,-118.4133 1590.5001,-118.4132"/>
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#56d8a2" stroke-width="2" d="M1833.5,-180C1833.5,-180 1712.5,-180 1712.5,-180 1706.5,-180 1700.5,-174 1700.5,-168 1700.5,-168 1700.5,-156 1700.5,-156 1700.5,-150 1706.5,-144 1712.5,-144 1712.5,-144 1833.5,-144 1833.5,-144 1839.5,-144 1845.5,-150 1845.5,-156 1845.5,-156 1845.5,-168 1845.5,-168 1845.5,-174 1839.5,-180 1833.5,-180"/>
<text text-anchor="middle" x="1773" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcripts_as_bed12</text>
</g>
<!-- 18&#45;&gt;7 -->
<g id="edge22" class="edge">
<title>18&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1726.0643,-143.8314C1700.8563,-134.0734 1669.6074,-121.977 1643.1209,-111.7242"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1644.1873,-108.384 1633.5981,-108.038 1641.6603,-114.912 1644.1873,-108.384"/>
</g>
<!-- 18&#45;&gt;8 -->
<g id="edge24" class="edge">
<title>18&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1773,-143.8314C1773,-136.131 1773,-126.9743 1773,-118.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1776.5001,-118.4132 1773,-108.4133 1769.5001,-118.4133 1776.5001,-118.4132"/>
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#d89c56" stroke-width="2" d="M2026,-180C2026,-180 1876,-180 1876,-180 1870,-180 1864,-174 1864,-168 1864,-168 1864,-156 1864,-156 1864,-150 1870,-144 1876,-144 1876,-144 2026,-144 2026,-144 2032,-144 2038,-150 2038,-156 2038,-156 2038,-168 2038,-168 2038,-174 2032,-180 2026,-180"/>
<text text-anchor="middle" x="1951" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
<!-- 19&#45;&gt;8 -->
<g id="edge23" class="edge">
<title>19&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1906.0831,-143.8314C1882.065,-134.1162 1852.3166,-122.0831 1827.0408,-111.8592"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1828.1767,-108.5432 1817.5939,-108.038 1825.5518,-115.0325 1828.1767,-108.5432"/>
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#569ad8" stroke-width="2" d="M1222,-401C1222,-401 954,-401 954,-401 948,-401 942,-395 942,-389 942,-389 942,-377 942,-377 942,-371 948,-365 954,-365 954,-365 1222,-365 1222,-365 1228,-365 1234,-371 1234,-377 1234,-377 1234,-389 1234,-389 1234,-395 1228,-401 1222,-401"/>
<text text-anchor="middle" x="1088" y="-386" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1088" y="-375" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 20&#45;&gt;13 -->
<g id="edge33" class="edge">
<title>20&#45;&gt;13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1091.1469,-364.9656C1092.6369,-356.427 1094.4506,-346.0333 1096.1138,-336.502"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1099.5658,-337.0793 1097.837,-326.6265 1092.67,-335.876 1099.5658,-337.0793"/>
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#566bd8" stroke-width="2" d="M1306.5,-326.5C1306.5,-326.5 1205.5,-326.5 1205.5,-326.5 1199.5,-326.5 1193.5,-320.5 1193.5,-314.5 1193.5,-314.5 1193.5,-302.5 1193.5,-302.5 1193.5,-296.5 1199.5,-290.5 1205.5,-290.5 1205.5,-290.5 1306.5,-290.5 1306.5,-290.5 1312.5,-290.5 1318.5,-296.5 1318.5,-302.5 1318.5,-302.5 1318.5,-314.5 1318.5,-314.5 1318.5,-320.5 1312.5,-326.5 1306.5,-326.5"/>
<text text-anchor="middle" x="1256" y="-311.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcriptome</text>
<text text-anchor="middle" x="1256" y="-300.5" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
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<!-- 21&#45;&gt;14 -->
<g id="edge34" class="edge">
<title>21&#45;&gt;14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1209.7642,-290.4656C1182.9826,-280.0194 1149.0828,-266.7967 1120.8216,-255.7734"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1122.0603,-252.4997 1111.472,-252.1265 1119.5165,-259.0212 1122.0603,-252.4997"/>
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<!-- 21&#45;&gt;16 -->
<g id="edge36" class="edge">
<title>21&#45;&gt;16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1258.9049,-290.4656C1260.2802,-281.927 1261.9544,-271.5333 1263.4896,-262.002"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1266.9454,-262.5559 1265.0803,-252.1265 1260.0345,-261.4426 1266.9454,-262.5559"/>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#56d87b" stroke-width="2" d="M1544,-401C1544,-401 1264,-401 1264,-401 1258,-401 1252,-395 1252,-389 1252,-389 1252,-377 1252,-377 1252,-371 1258,-365 1264,-365 1264,-365 1544,-365 1544,-365 1550,-365 1556,-371 1556,-377 1556,-377 1556,-389 1556,-389 1556,-395 1550,-401 1544,-401"/>
<text text-anchor="middle" x="1404" y="-386" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1404" y="-375" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
</g>
<!-- 22&#45;&gt;15 -->
<g id="edge35" class="edge">
<title>22&#45;&gt;15</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1403.2738,-364.9656C1402.9336,-356.5178 1402.5203,-346.2542 1402.1399,-336.8064"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1405.6295,-336.4776 1401.7299,-326.6265 1398.6352,-336.7593 1405.6295,-336.4776"/>
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<!-- 23&#45;&gt;17 -->
<g id="edge37" class="edge">
<title>23&#45;&gt;17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1540.6452,-215.8314C1547.8591,-207.454 1556.557,-197.3531 1564.4605,-188.1749"/>
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<!-- 24&#45;&gt;19 -->
<g id="edge38" class="edge">
<title>24&#45;&gt;19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1696.6822,-222.432C1742.0379,-211.6543 1810.6724,-195.3452 1865.2132,-182.385"/>
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</g>
<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#8fd856" stroke-width="2" d="M1615.5,-329C1615.5,-329 1514.5,-329 1514.5,-329 1508.5,-329 1502.5,-323 1502.5,-317 1502.5,-317 1502.5,-300 1502.5,-300 1502.5,-294 1508.5,-288 1514.5,-288 1514.5,-288 1615.5,-288 1615.5,-288 1621.5,-288 1627.5,-294 1627.5,-300 1627.5,-300 1627.5,-317 1627.5,-317 1627.5,-323 1621.5,-329 1615.5,-329"/>
<text text-anchor="middle" x="1565" y="-317" font-family="sans" font-size="10.00" fill="#000000">create_index_star</text>
<text text-anchor="middle" x="1565" y="-306" font-family="sans" font-size="10.00" fill="#000000">index_size: 75</text>
<text text-anchor="middle" x="1565" y="-295" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
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<!-- 25&#45;&gt;23 -->
<g id="edge39" class="edge">
<title>25&#45;&gt;23</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1553.8578,-287.7476C1549.397,-279.4394 1544.1995,-269.7591 1539.4543,-260.9211"/>
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<!-- 25&#45;&gt;24 -->
<g id="edge41" class="edge">
<title>25&#45;&gt;24</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1588.1201,-287.7476C1598.0583,-278.8272 1609.7587,-268.3251 1620.1677,-258.982"/>
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Alex Kanitz's avatar
Alex Kanitz committed
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