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<text text-anchor="middle" x="281.5" y="-15.5" font-family="sans" font-size="10.00">finish</text>
<g id="node2" class="node"><title>1</title>
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<text text-anchor="middle" x="113.5" y="-87.5" font-family="sans" font-size="10.00">pe_fastqc</text>
<g id="edge5" class="edge"><title>1->0</title>
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<text text-anchor="middle" x="188.5" y="-87.5" font-family="sans" font-size="10.00">fastqc</text>
<g id="edge6" class="edge"><title>2->0</title>
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<text text-anchor="middle" x="63.5" y="-231.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
<g id="edge7" class="edge"><title>3->0</title>
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<g id="node5" class="node"><title>4</title>
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<text text-anchor="middle" x="200.5" y="-231.5" font-family="sans" font-size="10.00">quantification_salmon</text>
<g id="edge3" class="edge"><title>4->0</title>
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<g id="node6" class="node"><title>5</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M428.5,-252C428.5,-252 286.5,-252 286.5,-252 280.5,-252 274.5,-246 274.5,-240 274.5,-240 274.5,-228 274.5,-228 274.5,-222 280.5,-216 286.5,-216 286.5,-216 428.5,-216 428.5,-216 434.5,-216 440.5,-222 440.5,-228 440.5,-228 440.5,-240 440.5,-240 440.5,-246 434.5,-252 428.5,-252"/>
<text text-anchor="middle" x="357.5" y="-231.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
<g id="edge4" class="edge"><title>5->0</title>
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<g id="node7" class="node"><title>6</title>
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<text text-anchor="middle" x="533.5" y="-231.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
<g id="edge2" class="edge"><title>6->0</title>
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<g id="node8" class="node"><title>7</title>
<path fill="none" stroke="#d86e56" stroke-width="2" d="M617.5,-108C617.5,-108 529.5,-108 529.5,-108 523.5,-108 517.5,-102 517.5,-96 517.5,-96 517.5,-84 517.5,-84 517.5,-78 523.5,-72 529.5,-72 529.5,-72 617.5,-72 617.5,-72 623.5,-72 629.5,-78 629.5,-84 629.5,-84 629.5,-96 629.5,-96 629.5,-102 623.5,-108 617.5,-108"/>
<text text-anchor="middle" x="573.5" y="-87.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
<g id="edge1" class="edge"><title>7->0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M517.199,-75.5033C458.593,-61.4537 368.502,-39.8566 318.378,-27.8405"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="319.151,-24.4268 308.61,-25.4991 317.519,-31.2339 319.151,-24.4268"/>
<g id="node9" class="node"><title>8</title>
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<text text-anchor="middle" x="304.5" y="-303.5" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
<!-- 8->3 -->
<g id="edge9" class="edge"><title>8->3</title>
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<!-- 8->5 -->
<g id="edge13" class="edge"><title>8->5</title>
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<!-- 17 -->
<g id="node18" class="node"><title>17</title>
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<text text-anchor="middle" x="683.5" y="-231.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 8->17 -->
<g id="edge24" class="edge"><title>8->17</title>
<path fill="none" stroke="grey" stroke-width="2" d="M372.886,-289.657C375.793,-289.082 378.674,-288.527 381.5,-288 482.647,-269.141 511.799,-272.997 616.656,-252.052"/>
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<g id="node10" class="node"><title>9</title>
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<text text-anchor="middle" x="113.5" y="-303.5" font-family="sans" font-size="10.00">create_index_salmon</text>
<g id="edge8" class="edge"><title>9->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M101.14,-287.697C95.2672,-279.474 88.1309,-269.483 81.6576,-260.421"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="84.3779,-258.207 75.7174,-252.104 78.6817,-262.276 84.3779,-258.207"/>
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<!-- 9->4 -->
<g id="edge11" class="edge"><title>9->4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M135.006,-287.697C145.963,-278.881 159.446,-268.032 171.325,-258.474"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="173.645,-261.1 179.242,-252.104 169.256,-255.646 173.645,-261.1"/>
<g id="node11" class="node"><title>10</title>
<path fill="none" stroke="#56d8d8" stroke-width="2" d="M624.5,-324C624.5,-324 528.5,-324 528.5,-324 522.5,-324 516.5,-318 516.5,-312 516.5,-312 516.5,-300 516.5,-300 516.5,-294 522.5,-288 528.5,-288 528.5,-288 624.5,-288 624.5,-288 630.5,-288 636.5,-294 636.5,-300 636.5,-300 636.5,-312 636.5,-312 636.5,-318 630.5,-324 624.5,-324"/>
<text text-anchor="middle" x="576.5" y="-303.5" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
<g id="edge10" class="edge"><title>10->4</title>
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<!-- 10->6 -->
<g id="edge14" class="edge"><title>10->6</title>
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<!-- 18 -->
<g id="node19" class="node"><title>18</title>
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<text text-anchor="middle" x="806.5" y="-231.5" font-family="sans" font-size="10.00">map_genome_star</text>
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<!-- 10->18 -->
<g id="edge25" class="edge"><title>10->18</title>
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<g id="node12" class="node"><title>11</title>
<path fill="none" stroke="#56d8c1" stroke-width="2" d="M486.5,-324C486.5,-324 402.5,-324 402.5,-324 396.5,-324 390.5,-318 390.5,-312 390.5,-312 390.5,-300 390.5,-300 390.5,-294 396.5,-288 402.5,-288 402.5,-288 486.5,-288 486.5,-288 492.5,-288 498.5,-294 498.5,-300 498.5,-300 498.5,-312 498.5,-312 498.5,-318 492.5,-324 486.5,-324"/>
<text text-anchor="middle" x="444.5" y="-303.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<g id="edge12" class="edge"><title>11->5</title>
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<g id="edge15" class="edge"><title>11->6</title>
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<g id="node13" class="node"><title>12</title>
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<text text-anchor="middle" x="480.5" y="-159.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
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<!-- 12->7 -->
<g id="edge17" class="edge"><title>12->7</title>
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<g id="node14" class="node"><title>13</title>
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<text text-anchor="middle" x="666.5" y="-159.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
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<!-- 13->7 -->
<g id="edge18" class="edge"><title>13->7</title>
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<text text-anchor="middle" x="844.5" y="-159.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
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<g id="node16" class="node"><title>15</title>
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<text text-anchor="middle" x="304.5" y="-375.5" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<!-- 15->8 -->
<g id="edge19" class="edge"><title>15->8</title>
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229
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234
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240
<!-- 16 -->
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<!-- 16->10 -->
<g id="edge20" class="edge"><title>16->10</title>
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<!-- 17->12 -->
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<!-- 18->14 -->
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<!-- 19 -->
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<!-- 19->17 -->
<g id="edge23" class="edge"><title>19->17</title>
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<!-- 19->18 -->
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