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<!-- Title: snakemake_dag Pages: 1 -->
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<title>snakemake_dag</title>
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<title>0</title>
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<title>1</title>
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<text text-anchor="middle" x="162.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="162.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<title>1->0</title>
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<title>2</title>
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<text text-anchor="middle" x="511.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="511.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<title>2->0</title>
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<title>3</title>
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<text text-anchor="middle" x="840.5" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
<g id="edge3" class="edge">
<title>3->0</title>
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<title>4</title>
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<text text-anchor="middle" x="1341.5" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<title>4->0</title>
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<title>5</title>
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<text text-anchor="middle" x="1439.5" y="-303.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
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<!-- 5->0 -->
<g id="edge5" class="edge">
<title>5->0</title>
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<title>6</title>
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<text text-anchor="middle" x="1718.5" y="-303.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
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<!-- 6->0 -->
<g id="edge6" class="edge">
<title>6->0</title>
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<!-- 7 -->
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<title>7</title>
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<text text-anchor="middle" x="1376.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1376.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<!-- 7->0 -->
<g id="edge7" class="edge">
<title>7->0</title>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="817.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="817.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<!-- 8->0 -->
<g id="edge8" class="edge">
<title>8->0</title>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="1003.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1003.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<!-- 9->0 -->
<g id="edge9" class="edge">
<title>9->0</title>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="1195.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1195.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<!-- 10->0 -->
<g id="edge10" class="edge">
<title>10->0</title>
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<!-- 11 -->
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<title>11</title>
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<text text-anchor="middle" x="1556.5" y="-303.5" font-family="sans" font-size="10.00">star_rpm</text>
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<title>11->0</title>
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<!-- 26 -->
<g id="node27" class="node">
<title>26</title>
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<text text-anchor="middle" x="1733.5" y="-231.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
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<!-- 11->26 -->
<g id="edge57" class="edge">
<title>11->26</title>
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<!-- 12 -->
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<title>12</title>
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<text text-anchor="middle" x="1951.5" y="-303.5" font-family="sans" font-size="10.00">star_rpm</text>
<g id="edge12" class="edge">
<title>12->0</title>
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<!-- 28 -->
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<title>28</title>
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<text text-anchor="middle" x="2031.5" y="-231.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
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<!-- 12->28 -->
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<title>12->28</title>
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<title>13</title>
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<text text-anchor="middle" x="1745.5" y="-159.5" font-family="sans" font-size="10.00">alfa_qc</text>
<!-- 13->0 -->
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<title>13->0</title>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
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<!-- 13->15 -->
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<title>13->15</title>
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<!-- 14 -->
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<title>14</title>
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<!-- 14->0 -->
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<title>14->0</title>
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<!-- 14->15 -->
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<title>14->15</title>
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<!-- 15->0 -->
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<title>15->0</title>
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<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1413.6767,-24.3528 1403.114,-25.1772 1411.8854,-31.1197 1413.6767,-24.3528"/>
<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M975.5,-542.5C975.5,-542.5 847.5,-542.5 847.5,-542.5 841.5,-542.5 835.5,-536.5 835.5,-530.5 835.5,-530.5 835.5,-518.5 835.5,-518.5 835.5,-512.5 841.5,-506.5 847.5,-506.5 847.5,-506.5 975.5,-506.5 975.5,-506.5 981.5,-506.5 987.5,-512.5 987.5,-518.5 987.5,-518.5 987.5,-530.5 987.5,-530.5 987.5,-536.5 981.5,-542.5 975.5,-542.5"/>
<text text-anchor="middle" x="911.5" y="-522" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
<!-- 16->3 -->
<g id="edge16" class="edge">
<title>16->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M837.5048,-506.4544C825.4956,-479.2448 805,-425.8044 805,-378 805,-378 805,-378 805,-306 805,-265.2729 796.673,-218.7384 790.5061,-189.8595"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="793.9177,-189.0768 788.3512,-180.0621 787.0811,-190.5806 793.9177,-189.0768"/>
</g>
<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#d8b456" stroke-width="2" d="M1481,-468C1481,-468 1380,-468 1380,-468 1374,-468 1368,-462 1368,-456 1368,-456 1368,-444 1368,-444 1368,-438 1374,-432 1380,-432 1380,-432 1481,-432 1481,-432 1487,-432 1493,-438 1493,-444 1493,-444 1493,-456 1493,-456 1493,-462 1487,-468 1481,-468"/>
<text text-anchor="middle" x="1430.5" y="-447.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
<!-- 16->19 -->
<g id="edge48" class="edge">
<title>16->19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M916.0618,-513.826C1009.3527,-499.6129 1173.3413,-474.629 1266.0609,-460.503"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1266.8217,-463.9276 1276.1804,-458.9613 1265.7673,-457.0074 1266.8217,-463.9276"/>
<!-- 24 -->
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#566bd8" stroke-width="2" d="M1082.5,-180C1082.5,-180 964.5,-180 964.5,-180 958.5,-180 952.5,-174 952.5,-168 952.5,-168 952.5,-156 952.5,-156 952.5,-150 958.5,-144 964.5,-144 964.5,-144 1082.5,-144 1082.5,-144 1088.5,-144 1094.5,-150 1094.5,-156 1094.5,-156 1094.5,-168 1094.5,-168 1094.5,-174 1088.5,-180 1082.5,-180"/>
<text text-anchor="middle" x="1023.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
<!-- 16->24 -->
<g id="edge53" class="edge">
<title>16->24</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M846,-506.4571C846,-478.8072 846,-424.2899 846,-378 846,-378 846,-378 846,-306 846,-265.1184 841.524,-249.4692 865,-216 873.792,-203.4655 886.5151,-193.253 899.5292,-185.2188"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="901.6392,-188.0416 908.5408,-180.003 898.1326,-181.9832 901.6392,-188.0416"/>
<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M1049,-252C1049,-252 952,-252 952,-252 946,-252 940,-246 940,-240 940,-240 940,-228 940,-228 940,-222 946,-216 952,-216 952,-216 1049,-216 1049,-216 1055,-216 1061,-222 1061,-228 1061,-228 1061,-240 1061,-240 1061,-246 1055,-252 1049,-252"/>
<text text-anchor="middle" x="1000.5" y="-231.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
</g>
<!-- 17->3 -->
<g id="edge17" class="edge">
<title>17->3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M892.4104,-215.8314C873.2761,-206.3302 849.6771,-194.6121 829.3878,-184.5374"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="830.8397,-181.3506 820.3265,-180.038 827.7265,-187.6203 830.8397,-181.3506"/>
</g>
<!-- 17->4 -->
<g id="edge19" class="edge">
<title>17->4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M984.1009,-218.271C987.1065,-217.4855 990.0875,-216.7234 993,-216 1009.0118,-212.0231 1090.6917,-194.4637 1156.3959,-180.4329"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1157.3283,-183.8128 1166.3773,-178.3023 1155.867,-176.967 1157.3283,-183.8128"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#56c9d8" stroke-width="2" d="M1321.5,-542.5C1321.5,-542.5 1211.5,-542.5 1211.5,-542.5 1205.5,-542.5 1199.5,-536.5 1199.5,-530.5 1199.5,-530.5 1199.5,-518.5 1199.5,-518.5 1199.5,-512.5 1205.5,-506.5 1211.5,-506.5 1211.5,-506.5 1321.5,-506.5 1321.5,-506.5 1327.5,-506.5 1333.5,-512.5 1333.5,-518.5 1333.5,-518.5 1333.5,-530.5 1333.5,-530.5 1333.5,-536.5 1327.5,-542.5 1321.5,-542.5"/>
<text text-anchor="middle" x="1266.5" y="-522" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
<!-- 18->4 -->
<g id="edge18" class="edge">
<title>18->4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1180,-506.4571C1180,-478.8072 1180,-424.2899 1180,-378 1180,-378 1180,-378 1180,-306 1180,-262.171 1204.7996,-216.6548 1223.2797,-188.8215"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1226.2621,-190.6608 1229.0183,-180.4307 1220.4841,-186.7091 1226.2621,-190.6608"/>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M1752,-468C1752,-468 1676,-468 1676,-468 1670,-468 1664,-462 1664,-456 1664,-456 1664,-444 1664,-444 1664,-438 1670,-432 1676,-432 1676,-432 1752,-432 1752,-432 1758,-432 1764,-438 1764,-444 1764,-444 1764,-456 1764,-456 1764,-462 1758,-468 1752,-468"/>
<text text-anchor="middle" x="1714" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
<!-- 18->22 -->
<g id="edge51" class="edge">
<title>18->22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1241.5172,-515.9175C1344.6577,-501.5281 1551.2037,-472.7122 1653.5953,-458.4273"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1654.3473,-461.8563 1663.7677,-457.0081 1653.38,-454.9235 1654.3473,-461.8563"/>
<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#56d873" stroke-width="2" d="M1226,-180C1226,-180 1125,-180 1125,-180 1119,-180 1113,-174 1113,-168 1113,-168 1113,-156 1113,-156 1113,-150 1119,-144 1125,-144 1125,-144 1226,-144 1226,-144 1232,-144 1238,-150 1238,-156 1238,-156 1238,-168 1238,-168 1238,-174 1232,-180 1226,-180"/>
<text text-anchor="middle" x="1175.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
</g>
<!-- 18->25 -->
<g id="edge55" class="edge">
<title>18->25</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1172.1264,-506.3912C1160.9959,-479.101 1142,-425.559 1142,-378 1142,-378 1142,-378 1142,-306 1142,-265.1184 1137.5773,-254.1944 1123,-216 1119.4899,-206.8032 1114.5546,-197.3165 1109.652,-188.9099"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1112.5935,-187.0106 1104.414,-180.2765 1106.6088,-190.6416 1112.5935,-187.0106"/>
</g>
<!-- 19->5 -->
<g id="edge20" class="edge">
<title>19->5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1279.1233,-431.902C1262.6378,-423.6643 1246.4852,-412.0564 1237,-396 1228.862,-382.2242 1228.6658,-373.658 1237,-360 1246.0596,-345.1533 1260.6481,-334.2161 1276.1053,-326.2279"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1277.751,-329.3208 1285.2715,-321.8581 1274.7386,-323.0022 1277.751,-329.3208"/>
</g>
<!-- 19->11 -->
<g id="edge34" class="edge">
<title>19->11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1386.4292,-431.9219C1403.6028,-423.4959 1421.3206,-411.7651 1433,-396 1446.1732,-378.2186 1450.6522,-353.3165 1451.9895,-334.2128"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1455.4956,-334.1536 1452.4503,-324.0059 1448.5028,-333.8378 1455.4956,-334.1536"/>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M1516.5,-396C1516.5,-396 1344.5,-396 1344.5,-396 1338.5,-396 1332.5,-390 1332.5,-384 1332.5,-384 1332.5,-372 1332.5,-372 1332.5,-366 1338.5,-360 1344.5,-360 1344.5,-360 1516.5,-360 1516.5,-360 1522.5,-360 1528.5,-366 1528.5,-372 1528.5,-372 1528.5,-384 1528.5,-384 1528.5,-390 1522.5,-396 1516.5,-396"/>
<text text-anchor="middle" x="1430.5" y="-381" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1430.5" y="-370" font-family="sans" font-size="10.00">seqmode: paired_end</text>
<!-- 19->20 -->
<g id="edge49" class="edge">
<title>19->20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1335,-431.8314C1335,-424.131 1335,-414.9743 1335,-406.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1338.5001,-406.4132 1335,-396.4133 1331.5001,-406.4133 1338.5001,-406.4132"/>
</g>
<!-- 20->5 -->
<g id="edge21" class="edge">
<title>20->5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1336.7664,-359.8314C1337.515,-352.131 1338.4053,-342.9743 1339.2373,-334.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1342.7256,-334.7051 1340.2098,-324.4133 1335.7585,-334.0276 1342.7256,-334.7051"/>
</g>
<!-- 20->11 -->
<g id="edge35" class="edge">
<title>20->11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1364.524,-359.8314C1379.8318,-350.4112 1398.6808,-338.8118 1414.9572,-328.7955"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1417.014,-331.6395 1423.6962,-323.4177 1413.3453,-325.6779 1417.014,-331.6395"/>
BIOPZ-Iborra de Toledo Paula
committed
</g>
367
368
369
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372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M1732.5,-396C1732.5,-396 1596.5,-396 1596.5,-396 1590.5,-396 1584.5,-390 1584.5,-384 1584.5,-384 1584.5,-372 1584.5,-372 1584.5,-366 1590.5,-360 1596.5,-360 1596.5,-360 1732.5,-360 1732.5,-360 1738.5,-360 1744.5,-366 1744.5,-372 1744.5,-372 1744.5,-384 1744.5,-384 1744.5,-390 1738.5,-396 1732.5,-396"/>
<text text-anchor="middle" x="1664.5" y="-375.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
</g>
<!-- 21->5 -->
<g id="edge22" class="edge">
<title>21->5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1500.7771,-359.9243C1471.6694,-350.0387 1435.4334,-337.7321 1404.9306,-327.3726"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1405.8392,-323.9849 1395.2448,-324.0831 1403.5881,-330.6131 1405.8392,-323.9849"/>
</g>
<!-- 21->6 -->
<g id="edge25" class="edge">
<title>21->6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1567.1218,-359.8314C1573.0499,-351.6232 1580.1729,-341.7606 1586.6933,-332.7323"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1589.684,-334.5693 1592.7015,-324.4133 1584.0092,-330.4708 1589.684,-334.5693"/>
</g>
<!-- 22->6 -->
<g id="edge23" class="edge">
<title>22->6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1700.3217,-431.7623C1681.4139,-406.5518 1647.1827,-360.9103 1625.5714,-332.0952"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1628.3673,-329.9896 1619.5672,-324.0896 1622.7672,-334.1897 1628.3673,-329.9896"/>
</g>
<!-- 22->12 -->
<g id="edge36" class="edge">
<title>22->12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1764.3807,-439.3338C1805.313,-429.5257 1858.2759,-413.8321 1871,-396 1885.6478,-375.4719 1869.0511,-350.0834 1851.3198,-331.5109"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1853.307,-328.5529 1843.739,-324.0026 1848.381,-333.5264 1853.307,-328.5529"/>
397
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400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
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422
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424
425
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427
428
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431
432
433
434
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436
437
438
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440
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449
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451
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455
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461
462
463
464
465
466
467
468
469
470
471
472
473
474
<!-- 23 -->
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M1984.5,-396C1984.5,-396 1812.5,-396 1812.5,-396 1806.5,-396 1800.5,-390 1800.5,-384 1800.5,-384 1800.5,-372 1800.5,-372 1800.5,-366 1806.5,-360 1812.5,-360 1812.5,-360 1984.5,-360 1984.5,-360 1990.5,-360 1996.5,-366 1996.5,-372 1996.5,-372 1996.5,-384 1996.5,-384 1996.5,-390 1990.5,-396 1984.5,-396"/>
<text text-anchor="middle" x="1898.5" y="-381" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1898.5" y="-370" font-family="sans" font-size="10.00">seqmode: single_end</text>
</g>
<!-- 22->23 -->
<g id="edge52" class="edge">
<title>22->23</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1728.8882,-431.8314C1735.753,-423.454 1744.0301,-413.3531 1751.5511,-404.1749"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1754.2803,-406.3665 1757.9114,-396.4133 1748.8659,-401.9297 1754.2803,-406.3665"/>
</g>
<!-- 23->6 -->
<g id="edge24" class="edge">
<title>23->6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1730.8588,-359.8314C1708.5236,-350.2018 1680.9064,-338.295 1657.329,-328.1299"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1658.4067,-324.7831 1647.8381,-324.038 1655.6353,-331.2112 1658.4067,-324.7831"/>
</g>
<!-- 23->12 -->
<g id="edge37" class="edge">
<title>23->12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1785.3648,-359.8314C1790.9509,-351.6232 1797.663,-341.7606 1803.8072,-332.7323"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1806.736,-334.6496 1809.4687,-324.4133 1800.949,-330.7112 1806.736,-334.6496"/>
</g>
<!-- 24->7 -->
<g id="edge26" class="edge">
<title>24->7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1017.3431,-145.9846C1020.2669,-145.3062 1023.1629,-144.6418 1026,-144 1102.1762,-126.7681 1121.6776,-124.5725 1198,-108 1198.1,-107.9783 1198.2001,-107.9566 1198.3002,-107.9348"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1198.7515,-111.4189 1207.7731,-105.8636 1197.2562,-104.5805 1198.7515,-111.4189"/>
</g>
<!-- 24->8 -->
<g id="edge28" class="edge">
<title>24->8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M903.8026,-143.8314C877.8034,-134.0306 845.5464,-121.8709 818.2719,-111.5894"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="819.4426,-108.2904 808.8508,-108.038 816.9734,-114.8404 819.4426,-108.2904"/>
</g>
<!-- 24->9 -->
<g id="edge30" class="edge">
<title>24->9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M947.2055,-143.8314C945.1511,-136.0463 942.704,-126.7729 940.4244,-118.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="943.7948,-117.1892 937.8591,-108.4133 937.0265,-118.9753 943.7948,-117.1892"/>
</g>
<!-- 24->10 -->
<g id="edge32" class="edge">
<title>24->10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M991.8701,-143.8314C1012.9077,-134.2446 1038.8983,-122.4008 1061.1396,-112.2655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1062.7683,-115.3697 1070.4166,-108.038 1059.8655,-108.9999 1062.7683,-115.3697"/>
</g>
<!-- 25->7 -->
<g id="edge27" class="edge">
<title>25->7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1138.9357,-143.8314C1164.1437,-134.0734 1195.3926,-121.977 1221.8791,-111.7242"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1223.3397,-114.912 1231.4019,-108.038 1220.8127,-108.384 1223.3397,-114.912"/>
</g>
<!-- 25->8 -->
<g id="edge29" class="edge">
<title>25->8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1035.1836,-146.2296C1032.0824,-145.4548 1029.0061,-144.7063 1026,-144 948.8652,-125.877 926.4696,-124.7982 845.7798,-108.3405"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="846.1432,-104.842 835.643,-106.255 844.7326,-111.6984 846.1432,-104.842"/>
</g>
<!-- 25->9 -->
<g id="edge31" class="edge">
<title>25->9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1051.8776,-143.8314C1030.7068,-134.2446 1004.5517,-122.4008 982.1697,-112.2655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="983.3872,-108.9748 972.8339,-108.038 980.4997,-115.3515 983.3872,-108.9748"/>
</g>
<!-- 25->10 -->
<g id="edge33" class="edge">
<title>25->10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1096.5422,-143.8314C1098.4884,-136.0463 1100.8068,-126.7729 1102.9663,-118.1347"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1106.3668,-118.9636 1105.3967,-108.4133 1099.5758,-117.2658 1106.3668,-118.9636"/>
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<!-- 26->13 -->
<g id="edge38" class="edge">
<title>26->13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1626.2804,-215.8314C1627.6708,-208.131 1629.3241,-198.9743 1630.8692,-190.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1634.3428,-190.8761 1632.6754,-180.4133 1627.4542,-189.6322 1634.3428,-190.8761"/>
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<!-- 27 -->
<g id="node28" class="node">
<title>27</title>
<path fill="none" stroke="#afd856" stroke-width="2" d="M1928.5,-252C1928.5,-252 1836.5,-252 1836.5,-252 1830.5,-252 1824.5,-246 1824.5,-240 1824.5,-240 1824.5,-228 1824.5,-228 1824.5,-222 1830.5,-216 1836.5,-216 1836.5,-216 1928.5,-216 1928.5,-216 1934.5,-216 1940.5,-222 1940.5,-228 1940.5,-228 1940.5,-240 1940.5,-240 1940.5,-246 1934.5,-252 1928.5,-252"/>
<text text-anchor="middle" x="1882.5" y="-231.5" font-family="sans" font-size="10.00">generate_alfa_index</text>
</g>
<!-- 27->13 -->
<g id="edge39" class="edge">
<title>27->13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1730.2049,-215.8314C1712.4119,-205.664 1690.1762,-192.9578 1671.7764,-182.4437"/>
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</g>
<!-- 27->14 -->
<g id="edge41" class="edge">
<title>27->14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1759.9813,-215.8314C1759.1257,-208.131 1758.1083,-198.9743 1757.1574,-190.4166"/>
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</g>
<!-- 28->14 -->
<g id="edge40" class="edge">
<title>28->14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1863.9057,-215.8314C1841.4302,-204.823 1812.8786,-190.8385 1790.5097,-179.8823"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1791.8575,-176.6452 1781.3373,-175.3897 1788.7784,-182.9316 1791.8575,-176.6452"/>
</g>
<!-- 29 -->
<g id="node30" class="node">
<title>29</title>
<path fill="none" stroke="#567bd8" stroke-width="2" d="M1062,-617C1062,-617 761,-617 761,-617 755,-617 749,-611 749,-605 749,-605 749,-593 749,-593 749,-587 755,-581 761,-581 761,-581 1062,-581 1062,-581 1068,-581 1074,-587 1074,-593 1074,-593 1074,-605 1074,-605 1074,-611 1068,-617 1062,-617"/>
<text text-anchor="middle" x="911.5" y="-602" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="911.5" y="-591" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 29->16 -->
<g id="edge44" class="edge">
<title>29->16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M846,-580.9656C846,-572.5178 846,-562.2542 846,-552.8064"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="849.5001,-552.6265 846,-542.6265 842.5001,-552.6265 849.5001,-552.6265"/>
</g>
<!-- 30 -->
<g id="node31" class="node">
<title>30</title>
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<text text-anchor="middle" x="1070.5" y="-309" font-family="sans" font-size="10.00">extract_transcriptome</text>
<text text-anchor="middle" x="1070.5" y="-298" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 30->17 -->
<g id="edge45" class="edge">
<title>30->17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M977.5978,-287.8314C969.9585,-279.3694 960.7317,-269.1489 952.3793,-259.8971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="954.9221,-257.4906 945.6231,-252.4133 949.7262,-262.1813 954.9221,-257.4906"/>
</g>
<!-- 33 -->
<g id="node34" class="node">
<title>33</title>
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<text text-anchor="middle" x="1139.5" y="-237" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="1139.5" y="-226" font-family="sans" font-size="10.00">kmer: 31</text>
</g>
<!-- 30->33 -->
<g id="edge60" class="edge">
<title>30->33</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1010.1499,-287.8314C1017.6717,-279.3694 1026.7565,-269.1489 1034.9804,-259.8971"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1037.6049,-262.2127 1041.6327,-252.4133 1032.373,-257.5621 1037.6049,-262.2127"/>
</g>
<!-- 31 -->
<g id="node32" class="node">
<title>31</title>
<path fill="none" stroke="#d87d56" stroke-width="2" d="M1423,-617C1423,-617 1110,-617 1110,-617 1104,-617 1098,-611 1098,-605 1098,-605 1098,-593 1098,-593 1098,-587 1104,-581 1110,-581 1110,-581 1423,-581 1423,-581 1429,-581 1435,-587 1435,-593 1435,-593 1435,-605 1435,-605 1435,-611 1429,-617 1423,-617"/>
<text text-anchor="middle" x="1266.5" y="-602" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1266.5" y="-591" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
</g>
<!-- 31->18 -->
<g id="edge46" class="edge">
<title>31->18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1180,-580.9656C1180,-572.5178 1180,-562.2542 1180,-552.8064"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1183.5001,-552.6265 1180,-542.6265 1176.5001,-552.6265 1183.5001,-552.6265"/>
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<!-- 32 -->
<g id="node33" class="node">
<title>32</title>
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<text text-anchor="middle" x="1835.5" y="-533" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="1835.5" y="-522" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1835.5" y="-511" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 32->19 -->
<g id="edge47" class="edge">
<title>32->19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1649.7078,-511.8621C1581.369,-498.4287 1473.7076,-477.2657 1403.7242,-463.5091"/>
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<!-- 32->22 -->
<g id="edge50" class="edge">
<title>32->22</title>
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<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1717.5001,-478.1086 1714,-468.1087 1710.5001,-478.1087 1717.5001,-478.1086"/>
</g>
<!-- 32->27 -->
<g id="edge58" class="edge">
<title>32->27</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1762.5839,-503.8712C1804.1389,-483.2856 1861.1975,-447.3071 1887,-396 1909.2788,-351.6997 1891.5795,-325.3823 1859,-288 1847.884,-275.2453 1832.9862,-264.8884 1818.2072,-256.7847"/>
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</g>
<!-- 33->24 -->
<g id="edge54" class="edge">
<title>33->24</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1031.2517,-215.8314C1017.9447,-206.7927 1001.684,-195.7476 987.3625,-186.0198"/>
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<!-- 33->25 -->
<g id="edge56" class="edge">
<title>33->25</title>
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