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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
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<!-- Generated by graphviz version 2.40.1 (20161225.0304)
 -->
<!-- Title: snakemake_dag Pages: 1 -->
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<title>snakemake_dag</title>
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<title>0</title>
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<text text-anchor="middle" x="1480.5" y="-15.5" font-family="sans" font-size="10.00">finish</text>
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<!-- 1 -->
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<title>1</title>
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<text text-anchor="middle" x="162.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="162.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<title>1&#45;&gt;0</title>
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<!-- 2 -->
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<title>2</title>
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<text text-anchor="middle" x="511.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="511.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<title>2&#45;&gt;0</title>
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<title>3</title>
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<text text-anchor="middle" x="840.5" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 3&#45;&gt;0 -->
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<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
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<title>4</title>
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<text text-anchor="middle" x="1341.5" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 4&#45;&gt;0 -->
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<title>4&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1306.8534,-143.9068C1325.4866,-135.7307 1344.2449,-124.1581 1357,-108 1370.7753,-90.5495 1375.1871,-65.462 1376.3456,-46.2048"/>
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<title>5</title>
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<text text-anchor="middle" x="1439.5" y="-303.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
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<title>5&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1346.4312,-287.8606C1354.648,-253.1867 1371.96,-174.985 1378,-108 1379.4369,-92.0647 1378.2961,-87.9973 1378,-72 1377.8479,-63.7824 1377.5656,-54.865 1377.2602,-46.6892"/>
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<title>6</title>
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<text text-anchor="middle" x="1718.5" y="-303.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
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<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1565.2947,-287.934C1548.0535,-278.8932 1528.617,-266.7175 1514,-252 1448.8925,-186.4447 1457.7339,-151.1073 1410,-72 1404.6476,-63.1296 1398.6686,-53.534 1393.235,-44.9268"/>
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<title>7</title>
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<text text-anchor="middle" x="1376.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1376.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1302.7295,-71.8314C1314.9162,-62.8779 1329.7823,-51.9558 1342.9312,-42.2955"/>
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<title>8</title>
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<text text-anchor="middle" x="817.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="817.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M835.582,-73.4116C838.4198,-72.912 841.2331,-72.439 844,-72 1028.3968,-42.7416 1251.3991,-26.1272 1338.5488,-20.3477"/>
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<title>9</title>
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<text text-anchor="middle" x="1003.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1003.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<g id="edge9" class="edge">
<title>9&#45;&gt;0</title>
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<title>10</title>
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<text text-anchor="middle" x="1195.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1195.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<g id="edge10" class="edge">
<title>10&#45;&gt;0</title>
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<title>11</title>
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<text text-anchor="middle" x="1556.5" y="-303.5" font-family="sans" font-size="10.00">star_rpm</text>
<!-- 11&#45;&gt;0 -->
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<g id="edge11" class="edge">
<title>11&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1447.561,-287.7343C1437.9116,-248.249 1414.1116,-152.0416 1392,-72 1389.6677,-63.5574 1387.0086,-54.4114 1384.5369,-46.088"/>
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<title>26</title>
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<text text-anchor="middle" x="1733.5" y="-231.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
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<!-- 11&#45;&gt;26 -->
<g id="edge57" class="edge">
<title>11&#45;&gt;26</title>
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<title>12</title>
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<text text-anchor="middle" x="1951.5" y="-303.5" font-family="sans" font-size="10.00">star_rpm</text>
<!-- 12&#45;&gt;0 -->
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<g id="edge12" class="edge">
<title>12&#45;&gt;0</title>
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<!-- 28 -->
<g id="node29" class="node">
<title>28</title>
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<text text-anchor="middle" x="2031.5" y="-231.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
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<!-- 12&#45;&gt;28 -->
<g id="edge59" class="edge">
<title>12&#45;&gt;28</title>
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<title>13</title>
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<text text-anchor="middle" x="1745.5" y="-159.5" font-family="sans" font-size="10.00">alfa_qc</text>
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<!-- 13&#45;&gt;0 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;0</title>
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<!-- 15 -->
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<title>15</title>
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<text text-anchor="middle" x="1756.5" y="-87.5" font-family="sans" font-size="10.00">alfa_qc_all_samples</text>
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<!-- 13&#45;&gt;15 -->
<g id="edge42" class="edge">
<title>13&#45;&gt;15</title>
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<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#56d8d0" stroke-width="2" d="M1887.5,-180C1887.5,-180 1857.5,-180 1857.5,-180 1851.5,-180 1845.5,-174 1845.5,-168 1845.5,-168 1845.5,-156 1845.5,-156 1845.5,-150 1851.5,-144 1857.5,-144 1857.5,-144 1887.5,-144 1887.5,-144 1893.5,-144 1899.5,-150 1899.5,-156 1899.5,-156 1899.5,-168 1899.5,-168 1899.5,-174 1893.5,-180 1887.5,-180"/>
<text text-anchor="middle" x="1872.5" y="-159.5" font-family="sans" font-size="10.00">alfa_qc</text>
</g>
<!-- 14&#45;&gt;0 -->
<g id="edge14" class="edge">
<title>14&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1750.5951,-143.9571C1745.6652,-123.1406 1734.4307,-89.5346 1711,-72 1664.433,-37.151 1490.3916,-23.9348 1413.233,-19.7128"/>
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</g>
<!-- 14&#45;&gt;15 -->
<g id="edge43" class="edge">
<title>14&#45;&gt;15</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1727.2517,-143.8314C1713.9447,-134.7927 1697.684,-123.7476 1683.3625,-114.0198"/>
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</g>
<!-- 15&#45;&gt;0 -->
<g id="edge15" class="edge">
<title>15&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1594.2616,-75.7751C1540.6047,-61.5718 1459.5833,-40.125 1412.8282,-27.7486"/>
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<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M975.5,-542.5C975.5,-542.5 847.5,-542.5 847.5,-542.5 841.5,-542.5 835.5,-536.5 835.5,-530.5 835.5,-530.5 835.5,-518.5 835.5,-518.5 835.5,-512.5 841.5,-506.5 847.5,-506.5 847.5,-506.5 975.5,-506.5 975.5,-506.5 981.5,-506.5 987.5,-512.5 987.5,-518.5 987.5,-518.5 987.5,-530.5 987.5,-530.5 987.5,-536.5 981.5,-542.5 975.5,-542.5"/>
<text text-anchor="middle" x="911.5" y="-522" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 16&#45;&gt;3 -->
<g id="edge16" class="edge">
<title>16&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M837.5048,-506.4544C825.4956,-479.2448 805,-425.8044 805,-378 805,-378 805,-378 805,-306 805,-265.2729 796.673,-218.7384 790.5061,-189.8595"/>
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<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#d8b456" stroke-width="2" d="M1481,-468C1481,-468 1380,-468 1380,-468 1374,-468 1368,-462 1368,-456 1368,-456 1368,-444 1368,-444 1368,-438 1374,-432 1380,-432 1380,-432 1481,-432 1481,-432 1487,-432 1493,-438 1493,-444 1493,-444 1493,-456 1493,-456 1493,-462 1487,-468 1481,-468"/>
<text text-anchor="middle" x="1430.5" y="-447.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 16&#45;&gt;19 -->
<g id="edge48" class="edge">
<title>16&#45;&gt;19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M916.0618,-513.826C1009.3527,-499.6129 1173.3413,-474.629 1266.0609,-460.503"/>
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<!-- 24 -->
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#566bd8" stroke-width="2" d="M1082.5,-180C1082.5,-180 964.5,-180 964.5,-180 958.5,-180 952.5,-174 952.5,-168 952.5,-168 952.5,-156 952.5,-156 952.5,-150 958.5,-144 964.5,-144 964.5,-144 1082.5,-144 1082.5,-144 1088.5,-144 1094.5,-150 1094.5,-156 1094.5,-156 1094.5,-168 1094.5,-168 1094.5,-174 1088.5,-180 1082.5,-180"/>
<text text-anchor="middle" x="1023.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
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<!-- 16&#45;&gt;24 -->
<g id="edge53" class="edge">
<title>16&#45;&gt;24</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M846,-506.4571C846,-478.8072 846,-424.2899 846,-378 846,-378 846,-378 846,-306 846,-265.1184 841.524,-249.4692 865,-216 873.792,-203.4655 886.5151,-193.253 899.5292,-185.2188"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="901.6392,-188.0416 908.5408,-180.003 898.1326,-181.9832 901.6392,-188.0416"/>
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<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M1049,-252C1049,-252 952,-252 952,-252 946,-252 940,-246 940,-240 940,-240 940,-228 940,-228 940,-222 946,-216 952,-216 952,-216 1049,-216 1049,-216 1055,-216 1061,-222 1061,-228 1061,-228 1061,-240 1061,-240 1061,-246 1055,-252 1049,-252"/>
<text text-anchor="middle" x="1000.5" y="-231.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
</g>
<!-- 17&#45;&gt;3 -->
<g id="edge17" class="edge">
<title>17&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M892.4104,-215.8314C873.2761,-206.3302 849.6771,-194.6121 829.3878,-184.5374"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="830.8397,-181.3506 820.3265,-180.038 827.7265,-187.6203 830.8397,-181.3506"/>
</g>
<!-- 17&#45;&gt;4 -->
<g id="edge19" class="edge">
<title>17&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M984.1009,-218.271C987.1065,-217.4855 990.0875,-216.7234 993,-216 1009.0118,-212.0231 1090.6917,-194.4637 1156.3959,-180.4329"/>
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<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#56c9d8" stroke-width="2" d="M1321.5,-542.5C1321.5,-542.5 1211.5,-542.5 1211.5,-542.5 1205.5,-542.5 1199.5,-536.5 1199.5,-530.5 1199.5,-530.5 1199.5,-518.5 1199.5,-518.5 1199.5,-512.5 1205.5,-506.5 1211.5,-506.5 1211.5,-506.5 1321.5,-506.5 1321.5,-506.5 1327.5,-506.5 1333.5,-512.5 1333.5,-518.5 1333.5,-518.5 1333.5,-530.5 1333.5,-530.5 1333.5,-536.5 1327.5,-542.5 1321.5,-542.5"/>
<text text-anchor="middle" x="1266.5" y="-522" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
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<!-- 18&#45;&gt;4 -->
<g id="edge18" class="edge">
<title>18&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1180,-506.4571C1180,-478.8072 1180,-424.2899 1180,-378 1180,-378 1180,-378 1180,-306 1180,-262.171 1204.7996,-216.6548 1223.2797,-188.8215"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1226.2621,-190.6608 1229.0183,-180.4307 1220.4841,-186.7091 1226.2621,-190.6608"/>
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<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M1752,-468C1752,-468 1676,-468 1676,-468 1670,-468 1664,-462 1664,-456 1664,-456 1664,-444 1664,-444 1664,-438 1670,-432 1676,-432 1676,-432 1752,-432 1752,-432 1758,-432 1764,-438 1764,-444 1764,-444 1764,-456 1764,-456 1764,-462 1758,-468 1752,-468"/>
<text text-anchor="middle" x="1714" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
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<!-- 18&#45;&gt;22 -->
<g id="edge51" class="edge">
<title>18&#45;&gt;22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1241.5172,-515.9175C1344.6577,-501.5281 1551.2037,-472.7122 1653.5953,-458.4273"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1654.3473,-461.8563 1663.7677,-457.0081 1653.38,-454.9235 1654.3473,-461.8563"/>
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<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#56d873" stroke-width="2" d="M1226,-180C1226,-180 1125,-180 1125,-180 1119,-180 1113,-174 1113,-168 1113,-168 1113,-156 1113,-156 1113,-150 1119,-144 1125,-144 1125,-144 1226,-144 1226,-144 1232,-144 1238,-150 1238,-156 1238,-156 1238,-168 1238,-168 1238,-174 1232,-180 1226,-180"/>
<text text-anchor="middle" x="1175.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
</g>
<!-- 18&#45;&gt;25 -->
<g id="edge55" class="edge">
<title>18&#45;&gt;25</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1172.1264,-506.3912C1160.9959,-479.101 1142,-425.559 1142,-378 1142,-378 1142,-378 1142,-306 1142,-265.1184 1137.5773,-254.1944 1123,-216 1119.4899,-206.8032 1114.5546,-197.3165 1109.652,-188.9099"/>
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</g>
<!-- 19&#45;&gt;5 -->
<g id="edge20" class="edge">
<title>19&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1279.1233,-431.902C1262.6378,-423.6643 1246.4852,-412.0564 1237,-396 1228.862,-382.2242 1228.6658,-373.658 1237,-360 1246.0596,-345.1533 1260.6481,-334.2161 1276.1053,-326.2279"/>
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</g>
<!-- 19&#45;&gt;11 -->
<g id="edge34" class="edge">
<title>19&#45;&gt;11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1386.4292,-431.9219C1403.6028,-423.4959 1421.3206,-411.7651 1433,-396 1446.1732,-378.2186 1450.6522,-353.3165 1451.9895,-334.2128"/>
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<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M1516.5,-396C1516.5,-396 1344.5,-396 1344.5,-396 1338.5,-396 1332.5,-390 1332.5,-384 1332.5,-384 1332.5,-372 1332.5,-372 1332.5,-366 1338.5,-360 1344.5,-360 1344.5,-360 1516.5,-360 1516.5,-360 1522.5,-360 1528.5,-366 1528.5,-372 1528.5,-372 1528.5,-384 1528.5,-384 1528.5,-390 1522.5,-396 1516.5,-396"/>
<text text-anchor="middle" x="1430.5" y="-381" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1430.5" y="-370" font-family="sans" font-size="10.00">seqmode: paired_end</text>
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<!-- 19&#45;&gt;20 -->
<g id="edge49" class="edge">
<title>19&#45;&gt;20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1335,-431.8314C1335,-424.131 1335,-414.9743 1335,-406.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1338.5001,-406.4132 1335,-396.4133 1331.5001,-406.4133 1338.5001,-406.4132"/>
</g>
<!-- 20&#45;&gt;5 -->
<g id="edge21" class="edge">
<title>20&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1336.7664,-359.8314C1337.515,-352.131 1338.4053,-342.9743 1339.2373,-334.4166"/>
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</g>
<!-- 20&#45;&gt;11 -->
<g id="edge35" class="edge">
<title>20&#45;&gt;11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1364.524,-359.8314C1379.8318,-350.4112 1398.6808,-338.8118 1414.9572,-328.7955"/>
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<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M1732.5,-396C1732.5,-396 1596.5,-396 1596.5,-396 1590.5,-396 1584.5,-390 1584.5,-384 1584.5,-384 1584.5,-372 1584.5,-372 1584.5,-366 1590.5,-360 1596.5,-360 1596.5,-360 1732.5,-360 1732.5,-360 1738.5,-360 1744.5,-366 1744.5,-372 1744.5,-372 1744.5,-384 1744.5,-384 1744.5,-390 1738.5,-396 1732.5,-396"/>
<text text-anchor="middle" x="1664.5" y="-375.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
</g>
<!-- 21&#45;&gt;5 -->
<g id="edge22" class="edge">
<title>21&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1500.7771,-359.9243C1471.6694,-350.0387 1435.4334,-337.7321 1404.9306,-327.3726"/>
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</g>
<!-- 21&#45;&gt;6 -->
<g id="edge25" class="edge">
<title>21&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1567.1218,-359.8314C1573.0499,-351.6232 1580.1729,-341.7606 1586.6933,-332.7323"/>
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</g>
<!-- 22&#45;&gt;6 -->
<g id="edge23" class="edge">
<title>22&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1700.3217,-431.7623C1681.4139,-406.5518 1647.1827,-360.9103 1625.5714,-332.0952"/>
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</g>
<!-- 22&#45;&gt;12 -->
<g id="edge36" class="edge">
<title>22&#45;&gt;12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1764.3807,-439.3338C1805.313,-429.5257 1858.2759,-413.8321 1871,-396 1885.6478,-375.4719 1869.0511,-350.0834 1851.3198,-331.5109"/>
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<!-- 23 -->
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M1984.5,-396C1984.5,-396 1812.5,-396 1812.5,-396 1806.5,-396 1800.5,-390 1800.5,-384 1800.5,-384 1800.5,-372 1800.5,-372 1800.5,-366 1806.5,-360 1812.5,-360 1812.5,-360 1984.5,-360 1984.5,-360 1990.5,-360 1996.5,-366 1996.5,-372 1996.5,-372 1996.5,-384 1996.5,-384 1996.5,-390 1990.5,-396 1984.5,-396"/>
<text text-anchor="middle" x="1898.5" y="-381" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1898.5" y="-370" font-family="sans" font-size="10.00">seqmode: single_end</text>
</g>
<!-- 22&#45;&gt;23 -->
<g id="edge52" class="edge">
<title>22&#45;&gt;23</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1728.8882,-431.8314C1735.753,-423.454 1744.0301,-413.3531 1751.5511,-404.1749"/>
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</g>
<!-- 23&#45;&gt;6 -->
<g id="edge24" class="edge">
<title>23&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1730.8588,-359.8314C1708.5236,-350.2018 1680.9064,-338.295 1657.329,-328.1299"/>
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</g>
<!-- 23&#45;&gt;12 -->
<g id="edge37" class="edge">
<title>23&#45;&gt;12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1785.3648,-359.8314C1790.9509,-351.6232 1797.663,-341.7606 1803.8072,-332.7323"/>
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</g>
<!-- 24&#45;&gt;7 -->
<g id="edge26" class="edge">
<title>24&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1017.3431,-145.9846C1020.2669,-145.3062 1023.1629,-144.6418 1026,-144 1102.1762,-126.7681 1121.6776,-124.5725 1198,-108 1198.1,-107.9783 1198.2001,-107.9566 1198.3002,-107.9348"/>
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</g>
<!-- 24&#45;&gt;8 -->
<g id="edge28" class="edge">
<title>24&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M903.8026,-143.8314C877.8034,-134.0306 845.5464,-121.8709 818.2719,-111.5894"/>
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</g>
<!-- 24&#45;&gt;9 -->
<g id="edge30" class="edge">
<title>24&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M947.2055,-143.8314C945.1511,-136.0463 942.704,-126.7729 940.4244,-118.1347"/>
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<!-- 24&#45;&gt;10 -->
<g id="edge32" class="edge">
<title>24&#45;&gt;10</title>
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<!-- 25&#45;&gt;7 -->
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<title>25&#45;&gt;7</title>
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<!-- 25&#45;&gt;8 -->
<g id="edge29" class="edge">
<title>25&#45;&gt;8</title>
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<!-- 25&#45;&gt;9 -->
<g id="edge31" class="edge">
<title>25&#45;&gt;9</title>
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<!-- 25&#45;&gt;10 -->
<g id="edge33" class="edge">
<title>25&#45;&gt;10</title>
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<!-- 26&#45;&gt;13 -->
<g id="edge38" class="edge">
<title>26&#45;&gt;13</title>
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Dominik Burri's avatar
Dominik Burri committed
<!-- 27 -->
<g id="node28" class="node">
<title>27</title>
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<text text-anchor="middle" x="1882.5" y="-231.5" font-family="sans" font-size="10.00">generate_alfa_index</text>
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<!-- 27&#45;&gt;13 -->
<g id="edge39" class="edge">
<title>27&#45;&gt;13</title>
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<!-- 27&#45;&gt;14 -->
<g id="edge41" class="edge">
<title>27&#45;&gt;14</title>
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<!-- 28&#45;&gt;14 -->
<g id="edge40" class="edge">
<title>28&#45;&gt;14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1863.9057,-215.8314C1841.4302,-204.823 1812.8786,-190.8385 1790.5097,-179.8823"/>
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<!-- 29 -->
<g id="node30" class="node">
<title>29</title>
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<text text-anchor="middle" x="911.5" y="-602" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="911.5" y="-591" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 29&#45;&gt;16 -->
<g id="edge44" class="edge">
<title>29&#45;&gt;16</title>
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<!-- 30 -->
<g id="node31" class="node">
<title>30</title>
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<text text-anchor="middle" x="1070.5" y="-309" font-family="sans" font-size="10.00">extract_transcriptome</text>
<text text-anchor="middle" x="1070.5" y="-298" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 30&#45;&gt;17 -->
<g id="edge45" class="edge">
<title>30&#45;&gt;17</title>
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<!-- 33 -->
<g id="node34" class="node">
<title>33</title>
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<text text-anchor="middle" x="1139.5" y="-237" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="1139.5" y="-226" font-family="sans" font-size="10.00">kmer: 31</text>
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<!-- 30&#45;&gt;33 -->
<g id="edge60" class="edge">
<title>30&#45;&gt;33</title>
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<!-- 31 -->
<g id="node32" class="node">
<title>31</title>
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<text text-anchor="middle" x="1266.5" y="-602" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1266.5" y="-591" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 31&#45;&gt;18 -->
<g id="edge46" class="edge">
<title>31&#45;&gt;18</title>
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<!-- 32 -->
<g id="node33" class="node">
<title>32</title>
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<text text-anchor="middle" x="1835.5" y="-522" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1835.5" y="-511" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 32&#45;&gt;19 -->
<g id="edge47" class="edge">
<title>32&#45;&gt;19</title>
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<!-- 32&#45;&gt;22 -->
<g id="edge50" class="edge">
<title>32&#45;&gt;22</title>
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<!-- 32&#45;&gt;27 -->
<g id="edge58" class="edge">
<title>32&#45;&gt;27</title>
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<!-- 33&#45;&gt;24 -->
<g id="edge54" class="edge">
<title>33&#45;&gt;24</title>
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<!-- 33&#45;&gt;25 -->
<g id="edge56" class="edge">
<title>33&#45;&gt;25</title>
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Alex Kanitz's avatar
Alex Kanitz committed
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