dag_test_workflow.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<title>snakemake_dag</title>
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<!-- 0 -->
<g id="node1" class="node">
<title>0</title>
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<text text-anchor="middle" x="1073" y="-15.5" font-family="sans" font-size="10.00" fill="#000000">finish</text>
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<text text-anchor="middle" x="146" y="-93" font-family="sans" font-size="10.00" fill="#000000">pe_fastqc</text>
<text text-anchor="middle" x="146" y="-82" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<text text-anchor="middle" x="462" y="-93" font-family="sans" font-size="10.00" fill="#000000">fastqc</text>
<text text-anchor="middle" x="462" y="-82" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="987" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_quantification_salmon</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M923.207,-147.3698C918.0643,-146.2194 912.9466,-145.0842 908,-144 827.4499,-126.3457 683.5164,-134.7655 737,-72 756.2467,-49.4131 952.2269,-29.0197 1035.6878,-21.2881"/>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="1324" y="-93" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1324" y="-82" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: tpm</text>
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<!-- 3&#45;&gt;9 -->
<g id="edge27" class="edge">
<title>3&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1050.6778,-149.1163C1103.1545,-138.4046 1179.4904,-122.6059 1246,-108 1246.1018,-107.9776 1246.2037,-107.9553 1246.3056,-107.9329"/>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#d87d56" stroke-width="2" d="M879.5,-108C879.5,-108 758.5,-108 758.5,-108 752.5,-108 746.5,-102 746.5,-96 746.5,-96 746.5,-84 746.5,-84 746.5,-78 752.5,-72 758.5,-72 758.5,-72 879.5,-72 879.5,-72 885.5,-72 891.5,-78 891.5,-84 891.5,-84 891.5,-96 891.5,-96 891.5,-102 885.5,-108 879.5,-108"/>
<text text-anchor="middle" x="819" y="-93" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="819" y="-82" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: numreads</text>
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<!-- 3&#45;&gt;10 -->
<g id="edge29" class="edge">
<title>3&#45;&gt;10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M944.6065,-143.8314C922.0376,-134.159 894.1079,-122.1891 870.3204,-111.9944"/>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M1052.5,-108C1052.5,-108 921.5,-108 921.5,-108 915.5,-108 909.5,-102 909.5,-96 909.5,-96 909.5,-84 909.5,-84 909.5,-78 915.5,-72 921.5,-72 921.5,-72 1052.5,-72 1052.5,-72 1058.5,-72 1064.5,-78 1064.5,-84 1064.5,-84 1064.5,-96 1064.5,-96 1064.5,-102 1058.5,-108 1052.5,-108"/>
<text text-anchor="middle" x="987" y="-93" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="987" y="-82" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: tpm</text>
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<!-- 3&#45;&gt;11 -->
<g id="edge31" class="edge">
<title>3&#45;&gt;11</title>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
<path fill="none" stroke="#61d856" stroke-width="2" d="M1225.5,-108C1225.5,-108 1094.5,-108 1094.5,-108 1088.5,-108 1082.5,-102 1082.5,-96 1082.5,-96 1082.5,-84 1082.5,-84 1082.5,-78 1088.5,-72 1094.5,-72 1094.5,-72 1225.5,-72 1225.5,-72 1231.5,-72 1237.5,-78 1237.5,-84 1237.5,-84 1237.5,-96 1237.5,-96 1237.5,-102 1231.5,-108 1225.5,-108"/>
<text text-anchor="middle" x="1160" y="-93" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1160" y="-82" font-family="sans" font-size="10.00" fill="#000000">salmon_merge_on: numreads</text>
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<!-- 3&#45;&gt;12 -->
<g id="edge33" class="edge">
<title>3&#45;&gt;12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1030.6552,-143.8314C1053.8958,-134.159 1082.6568,-122.1891 1107.1523,-111.9944"/>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
<path fill="none" stroke="#5682d8" stroke-width="2" d="M1203.5,-180C1203.5,-180 1116.5,-180 1116.5,-180 1110.5,-180 1104.5,-174 1104.5,-168 1104.5,-168 1104.5,-156 1104.5,-156 1104.5,-150 1110.5,-144 1116.5,-144 1116.5,-144 1203.5,-144 1203.5,-144 1209.5,-144 1215.5,-150 1215.5,-156 1215.5,-156 1215.5,-168 1215.5,-168 1215.5,-174 1209.5,-180 1203.5,-180"/>
<text text-anchor="middle" x="1160" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">quantification_salmon</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1215.6074,-157.444C1279.4185,-150.9274 1378.2197,-136.4495 1401,-108 1411.0007,-95.5105 1411.3541,-84.1981 1401,-72 1382.3059,-49.9765 1192.2107,-29.3705 1110.2636,-21.4368"/>
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<!-- 4&#45;&gt;9 -->
<g id="edge28" class="edge">
<title>4&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1201.3841,-143.8314C1223.3182,-134.2018 1250.4392,-122.295 1273.5931,-112.1299"/>
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<!-- 4&#45;&gt;10 -->
<g id="edge30" class="edge">
<title>4&#45;&gt;10</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1104.4158,-150.6883C1054.0038,-140.3764 977.3612,-124.5684 901.9893,-108.4156"/>
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<!-- 4&#45;&gt;11 -->
<g id="edge32" class="edge">
<title>4&#45;&gt;11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1116.3448,-143.8314C1093.1042,-134.159 1064.3432,-122.1891 1039.8477,-111.9944"/>
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<!-- 4&#45;&gt;12 -->
<g id="edge34" class="edge">
<title>4&#45;&gt;12</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1160,-143.8314C1160,-136.131 1160,-126.9743 1160,-118.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1163.5001,-118.4132 1160,-108.4133 1156.5001,-118.4133 1163.5001,-118.4132"/>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
<path fill="none" stroke="#56c1d8" stroke-width="2" d="M719,-180C719,-180 577,-180 577,-180 571,-180 565,-174 565,-168 565,-168 565,-156 565,-156 565,-150 571,-144 577,-144 577,-144 719,-144 719,-144 725,-144 731,-150 731,-156 731,-156 731,-168 731,-168 731,-174 725,-180 719,-180"/>
<text text-anchor="middle" x="648" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_genome_quantification_kallisto</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M655.3856,-143.7578C664.9136,-122.7498 683.5895,-88.9596 711,-72 764.8472,-38.6833 954.2591,-24.513 1035.5187,-19.8704"/>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M887,-180C887,-180 761,-180 761,-180 755,-180 749,-174 749,-168 749,-168 749,-156 749,-156 749,-150 755,-144 761,-144 761,-144 887,-144 887,-144 893,-144 899,-150 899,-156 899,-156 899,-168 899,-168 899,-174 893,-180 887,-180"/>
<text text-anchor="middle" x="824" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">genome_quantification_kallisto</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M764.8288,-143.88C748.0479,-135.7024 731.715,-124.1357 722,-108 713.7471,-94.2927 711.5819,-84.1434 722,-72 742.3046,-48.3328 949.7311,-28.3477 1035.8409,-21.0061"/>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
<path fill="none" stroke="#56d8a2" stroke-width="2" d="M1674,-108C1674,-108 1586,-108 1586,-108 1580,-108 1574,-102 1574,-96 1574,-96 1574,-84 1574,-84 1574,-78 1580,-72 1586,-72 1586,-72 1674,-72 1674,-72 1680,-72 1686,-78 1686,-84 1686,-84 1686,-96 1686,-96 1686,-102 1680,-108 1674,-108"/>
<text text-anchor="middle" x="1630" y="-93" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<text text-anchor="middle" x="1630" y="-82" font-family="sans" font-size="10.00" fill="#000000">seqmode: paired_end</text>
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<!-- 7&#45;&gt;0 -->
<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1573.7608,-73.8301C1570.808,-73.168 1567.8748,-72.5521 1565,-72 1397.0468,-39.7453 1192.867,-25.0044 1110.3037,-20.0406"/>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
<path fill="none" stroke="#56d8a2" stroke-width="2" d="M1804,-108C1804,-108 1716,-108 1716,-108 1710,-108 1704,-102 1704,-96 1704,-96 1704,-84 1704,-84 1704,-78 1710,-72 1716,-72 1716,-72 1804,-72 1804,-72 1810,-72 1816,-78 1816,-84 1816,-84 1816,-96 1816,-96 1816,-102 1810,-108 1804,-108"/>
<text text-anchor="middle" x="1760" y="-93" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<text text-anchor="middle" x="1760" y="-82" font-family="sans" font-size="10.00" fill="#000000">seqmode: single_end</text>
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<!-- 8&#45;&gt;0 -->
<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1703.7757,-73.7502C1700.819,-73.109 1697.8809,-72.5194 1695,-72 1475.7405,-32.4691 1207.5916,-21.6058 1110.4092,-18.8593"/>
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<!-- 9&#45;&gt;0 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1260.9861,-71.9243C1213.2951,-58.244 1149.4414,-39.9274 1109.7811,-28.5508"/>
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<!-- 10&#45;&gt;0 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M882.7671,-71.9243C931.1305,-58.215 995.9194,-39.8496 1036.0346,-28.4784"/>
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<!-- 11&#45;&gt;0 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1008.7014,-71.8314C1019.1921,-63.0485 1031.9455,-52.3712 1043.3194,-42.8489"/>
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<!-- 12&#45;&gt;0 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1138.0462,-71.8314C1127.3305,-62.9632 1114.2811,-52.1637 1102.691,-42.5718"/>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
<path fill="none" stroke="#c6d856" stroke-width="2" d="M1543.5,-108C1543.5,-108 1460.5,-108 1460.5,-108 1454.5,-108 1448.5,-102 1448.5,-96 1448.5,-96 1448.5,-84 1448.5,-84 1448.5,-78 1454.5,-72 1460.5,-72 1460.5,-72 1543.5,-72 1543.5,-72 1549.5,-72 1555.5,-78 1555.5,-84 1555.5,-84 1555.5,-96 1555.5,-96 1555.5,-102 1549.5,-108 1543.5,-108"/>
<text text-anchor="middle" x="1502" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm_paired_end</text>
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<!-- 13&#45;&gt;0 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1448.308,-75.2021C1443.4857,-74.0506 1438.6643,-72.9631 1434,-72 1317.0102,-47.8429 1176.5727,-29.9825 1110.6523,-22.2439"/>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
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<text text-anchor="middle" x="1888" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">star_rpm_single_end</text>
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<!-- 14&#45;&gt;0 -->
<g id="edge14" class="edge">
<title>14&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1834.2148,-73.8421C1831.1116,-73.1569 1828.0244,-72.5347 1825,-72 1685.2143,-47.2858 1242.4607,-25.6858 1110.482,-19.6645"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1110.25,-16.1505 1100.1017,-19.1939 1109.9329,-23.1433 1110.25,-16.1505"/>
</g>
<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
<path fill="none" stroke="#56a9d8" stroke-width="2" d="M918,-326.5C918,-326.5 806,-326.5 806,-326.5 800,-326.5 794,-320.5 794,-314.5 794,-314.5 794,-302.5 794,-302.5 794,-296.5 800,-290.5 806,-290.5 806,-290.5 918,-290.5 918,-290.5 924,-290.5 930,-296.5 930,-302.5 930,-302.5 930,-314.5 930,-314.5 930,-320.5 924,-326.5 918,-326.5"/>
<text text-anchor="middle" x="862" y="-306" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
</g>
<!-- 15&#45;&gt;3 -->
<g id="edge15" class="edge">
<title>15&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M877.5786,-290.2419C899.5931,-264.4409 939.9104,-217.189 964.9793,-187.8083"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="967.7895,-189.907 971.6177,-180.028 962.4644,-185.3634 967.7895,-189.907"/>
</g>
<!-- 15&#45;&gt;5 -->
<g id="edge19" class="edge">
<title>15&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M825.7098,-290.3394C805.8181,-279.9088 781.007,-266.1075 760,-252 729.9375,-231.8113 697.9539,-205.5778 675.8955,-186.6474"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="678.0935,-183.921 668.2397,-180.0282 673.5152,-189.2163 678.0935,-183.921"/>
</g>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M1455.5,-252C1455.5,-252 1366.5,-252 1366.5,-252 1360.5,-252 1354.5,-246 1354.5,-240 1354.5,-240 1354.5,-228 1354.5,-228 1354.5,-222 1360.5,-216 1366.5,-216 1366.5,-216 1455.5,-216 1455.5,-216 1461.5,-216 1467.5,-222 1467.5,-228 1467.5,-228 1467.5,-240 1467.5,-240 1467.5,-246 1461.5,-252 1455.5,-252"/>
<text text-anchor="middle" x="1411" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">pe_map_genome_star</text>
</g>
<!-- 15&#45;&gt;22 -->
<g id="edge46" class="edge">
<title>15&#45;&gt;22</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M930.3123,-290.7169C934.9305,-289.7326 939.5245,-288.8146 944,-288 1085.2977,-262.2809 1252.997,-246.4049 1344.041,-238.9922"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1344.5331,-242.464 1354.22,-238.1727 1343.9713,-235.4865 1344.5331,-242.464"/>
</g>
<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#d86e56" stroke-width="2" d="M1068.5,-252C1068.5,-252 983.5,-252 983.5,-252 977.5,-252 971.5,-246 971.5,-240 971.5,-240 971.5,-228 971.5,-228 971.5,-222 977.5,-216 983.5,-216 983.5,-216 1068.5,-216 1068.5,-216 1074.5,-216 1080.5,-222 1080.5,-228 1080.5,-228 1080.5,-240 1080.5,-240 1080.5,-246 1074.5,-252 1068.5,-252"/>
<text text-anchor="middle" x="1026" y="-237" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
<text text-anchor="middle" x="1026" y="-226" font-family="sans" font-size="10.00" fill="#000000">kmer: 31</text>
</g>
<!-- 16&#45;&gt;3 -->
<g id="edge16" class="edge">
<title>16&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1016.1587,-215.8314C1011.8043,-207.7925 1006.5902,-198.1666 1001.7831,-189.2918"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1004.8143,-187.5392 996.9739,-180.4133 998.6592,-190.8732 1004.8143,-187.5392"/>
</g>
<!-- 16&#45;&gt;4 -->
<g id="edge18" class="edge">
<title>16&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1059.8139,-215.8314C1077.2707,-206.4516 1098.7487,-194.9112 1117.3352,-184.9244"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1119.0446,-187.9792 1126.197,-180.1628 1115.7314,-181.8129 1119.0446,-187.9792"/>
</g>
<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M1210,-326.5C1210,-326.5 1114,-326.5 1114,-326.5 1108,-326.5 1102,-320.5 1102,-314.5 1102,-314.5 1102,-302.5 1102,-302.5 1102,-296.5 1108,-290.5 1114,-290.5 1114,-290.5 1210,-290.5 1210,-290.5 1216,-290.5 1222,-296.5 1222,-302.5 1222,-302.5 1222,-314.5 1222,-314.5 1222,-320.5 1216,-326.5 1210,-326.5"/>
<text text-anchor="middle" x="1162" y="-306" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
</g>
<!-- 17&#45;&gt;4 -->
<g id="edge17" class="edge">
<title>17&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1161.7507,-290.2419C1161.4075,-265.1025 1160.7863,-219.5981 1160.3837,-190.1029"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1163.8824,-189.9793 1160.2461,-180.028 1156.883,-190.0749 1163.8824,-189.9793"/>
</g>
<!-- 17&#45;&gt;6 -->
<g id="edge21" class="edge">
<title>17&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1101.7546,-291.9557C1045.2913,-276.3765 968.5797,-254.9907 962,-252 922.9956,-234.2714 882.3898,-206.4771 855.4101,-186.4657"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="857.2474,-183.4685 847.1486,-180.2647 853.0452,-189.0669 857.2474,-183.4685"/>
</g>
<!-- 23 -->
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#566bd8" stroke-width="2" d="M1752.5,-252C1752.5,-252 1679.5,-252 1679.5,-252 1673.5,-252 1667.5,-246 1667.5,-240 1667.5,-240 1667.5,-228 1667.5,-228 1667.5,-222 1673.5,-216 1679.5,-216 1679.5,-216 1752.5,-216 1752.5,-216 1758.5,-216 1764.5,-222 1764.5,-228 1764.5,-228 1764.5,-240 1764.5,-240 1764.5,-246 1758.5,-252 1752.5,-252"/>
<text text-anchor="middle" x="1716" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
</g>
<!-- 17&#45;&gt;23 -->
<g id="edge48" class="edge">
<title>17&#45;&gt;23</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1222.078,-300.4209C1329.0221,-286.0395 1551.1122,-256.1735 1657.1603,-241.9126"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1657.9155,-245.3426 1667.3598,-240.541 1656.9825,-238.405 1657.9155,-245.3426"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#d8bc56" stroke-width="2" d="M865,-252C865,-252 781,-252 781,-252 775,-252 769,-246 769,-240 769,-240 769,-228 769,-228 769,-222 775,-216 781,-216 781,-216 865,-216 865,-216 871,-216 877,-222 877,-228 877,-228 877,-240 877,-240 877,-246 871,-252 865,-252"/>
<text text-anchor="middle" x="823" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
</g>
<!-- 18&#45;&gt;5 -->
<g id="edge20" class="edge">
<title>18&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M778.8401,-215.8314C755.2268,-206.1162 725.9798,-194.0831 701.13,-183.8592"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="702.4219,-180.6061 691.8423,-180.038 699.7585,-187.0797 702.4219,-180.6061"/>
</g>
<!-- 18&#45;&gt;6 -->
<g id="edge22" class="edge">
<title>18&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M823.2523,-215.8314C823.3593,-208.131 823.4865,-198.9743 823.6053,-190.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="827.1049,-190.4609 823.7443,-180.4133 820.1056,-190.3637 827.1049,-190.4609"/>
</g>
<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M1556,-180C1556,-180 1390,-180 1390,-180 1384,-180 1378,-174 1378,-168 1378,-168 1378,-156 1378,-156 1378,-150 1384,-144 1390,-144 1390,-144 1556,-144 1556,-144 1562,-144 1568,-150 1568,-156 1568,-156 1568,-168 1568,-168 1568,-174 1562,-180 1556,-180"/>
<text text-anchor="middle" x="1473" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_index_genomic_alignment_samtools</text>
</g>
<!-- 19&#45;&gt;7 -->
<g id="edge23" class="edge">
<title>19&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1512.6177,-143.8314C1533.5222,-134.2446 1559.3483,-122.4008 1581.4488,-112.2655"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1583.0364,-115.388 1590.6672,-108.038 1580.1184,-109.0252 1583.0364,-115.388"/>
</g>
<!-- 19&#45;&gt;13 -->
<g id="edge36" class="edge">
<title>19&#45;&gt;13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1480.3179,-143.8314C1483.4876,-135.9617 1487.27,-126.5712 1490.7813,-117.8533"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1494.0939,-118.9968 1494.5835,-108.4133 1487.6008,-116.3815 1494.0939,-118.9968"/>
</g>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#88d856" stroke-width="2" d="M1719.5,-180C1719.5,-180 1598.5,-180 1598.5,-180 1592.5,-180 1586.5,-174 1586.5,-168 1586.5,-168 1586.5,-156 1586.5,-156 1586.5,-150 1592.5,-144 1598.5,-144 1598.5,-144 1719.5,-144 1719.5,-144 1725.5,-144 1731.5,-150 1731.5,-156 1731.5,-156 1731.5,-168 1731.5,-168 1731.5,-174 1725.5,-180 1719.5,-180"/>
<text text-anchor="middle" x="1659" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcripts_as_bed12</text>
</g>
<!-- 20&#45;&gt;7 -->
<g id="edge24" class="edge">
<title>20&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1651.6821,-143.8314C1648.5124,-135.9617 1644.73,-126.5712 1641.2187,-117.8533"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1644.3992,-116.3815 1637.4165,-108.4133 1637.9061,-118.9968 1644.3992,-116.3815"/>
</g>
<!-- 20&#45;&gt;8 -->
<g id="edge26" class="edge">
<title>20&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1684.4866,-143.8314C1697.1659,-134.7927 1712.6596,-123.7476 1726.3055,-114.0198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1728.4105,-116.8176 1734.5216,-108.1628 1724.3471,-111.1176 1728.4105,-116.8176"/>
</g>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#56d0d8" stroke-width="2" d="M1912,-180C1912,-180 1762,-180 1762,-180 1756,-180 1750,-174 1750,-168 1750,-168 1750,-156 1750,-156 1750,-150 1756,-144 1762,-144 1762,-144 1912,-144 1912,-144 1918,-144 1924,-150 1924,-156 1924,-156 1924,-168 1924,-168 1924,-174 1918,-180 1912,-180"/>
<text text-anchor="middle" x="1837" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
</g>
<!-- 21&#45;&gt;8 -->
<g id="edge25" class="edge">
<title>21&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1817.5696,-143.8314C1808.268,-135.1337 1796.9796,-124.5783 1786.8714,-115.1265"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1789.1189,-112.4363 1779.4241,-108.1628 1784.3379,-117.5493 1789.1189,-112.4363"/>
</g>
<!-- 21&#45;&gt;14 -->
<g id="edge38" class="edge">
<title>21&#45;&gt;14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1849.8695,-143.8314C1855.6835,-135.6232 1862.6696,-125.7606 1869.0646,-116.7323"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1872.0331,-118.5966 1874.9573,-108.4133 1866.321,-114.5505 1872.0331,-118.5966"/>
</g>
<!-- 22&#45;&gt;13 -->
<g id="edge35" class="edge">
<title>22&#45;&gt;13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1391.8604,-215.8802C1374.3626,-197.0568 1353.3998,-167.1709 1369,-144 1377.5714,-131.269 1408.6828,-118.2882 1438.6606,-108.2451"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1439.903,-111.5213 1448.3238,-105.0916 1437.7313,-104.8667 1439.903,-111.5213"/>
</g>
<!-- 22&#45;&gt;19 -->
<g id="edge43" class="edge">
<title>22&#45;&gt;19</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1426.6452,-215.8314C1433.8591,-207.454 1442.557,-197.3531 1450.4605,-188.1749"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1453.2711,-190.2748 1457.1441,-180.4133 1447.9667,-185.7071 1453.2711,-190.2748"/>
</g>
<!-- 23&#45;&gt;14 -->
<g id="edge37" class="edge">
<title>23&#45;&gt;14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1764.6187,-228.8067C1822.0772,-221.5499 1912.4985,-206.2285 1933,-180 1948.4125,-160.2821 1932.4822,-134.4478 1915.4622,-115.5178"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1917.8661,-112.9664 1908.4443,-108.1207 1912.7879,-117.7842 1917.8661,-112.9664"/>
</g>
<!-- 23&#45;&gt;21 -->
<g id="edge44" class="edge">
<title>23&#45;&gt;21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1746.5334,-215.8314C1762.0101,-206.6221 1780.9869,-195.3301 1797.5563,-185.4706"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1799.6724,-188.2843 1806.4764,-180.1628 1796.0929,-182.2687 1799.6724,-188.2843"/>
</g>
<!-- 24 -->
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#78d856" stroke-width="2" d="M983,-401C983,-401 715,-401 715,-401 709,-401 703,-395 703,-389 703,-389 703,-377 703,-377 703,-371 709,-365 715,-365 715,-365 983,-365 983,-365 989,-365 995,-371 995,-377 995,-377 995,-389 995,-389 995,-395 989,-401 983,-401"/>
<text text-anchor="middle" x="849" y="-386" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="849" y="-375" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 24&#45;&gt;15 -->
<g id="edge39" class="edge">
<title>24&#45;&gt;15</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M852.1469,-364.9656C853.6369,-356.427 855.4506,-346.0333 857.1138,-336.502"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="860.5658,-337.0793 858.837,-326.6265 853.67,-335.876 860.5658,-337.0793"/>
</g>
<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#56d8b1" stroke-width="2" d="M1066.5,-326.5C1066.5,-326.5 965.5,-326.5 965.5,-326.5 959.5,-326.5 953.5,-320.5 953.5,-314.5 953.5,-314.5 953.5,-302.5 953.5,-302.5 953.5,-296.5 959.5,-290.5 965.5,-290.5 965.5,-290.5 1066.5,-290.5 1066.5,-290.5 1072.5,-290.5 1078.5,-296.5 1078.5,-302.5 1078.5,-302.5 1078.5,-314.5 1078.5,-314.5 1078.5,-320.5 1072.5,-326.5 1066.5,-326.5"/>
<text text-anchor="middle" x="1016" y="-311.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcriptome</text>
<text text-anchor="middle" x="1016" y="-300.5" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
</g>
<!-- 25&#45;&gt;16 -->
<g id="edge40" class="edge">
<title>25&#45;&gt;16</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1018.4207,-290.4656C1019.5547,-282.0178 1020.9323,-271.7542 1022.2005,-262.3064"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1025.7054,-262.5033 1023.5669,-252.1265 1018.7676,-261.572 1025.7054,-262.5033"/>
</g>
<!-- 25&#45;&gt;18 -->
<g id="edge42" class="edge">
<title>25&#45;&gt;18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M969.2801,-290.4656C942.218,-280.0194 907.9633,-266.7967 879.4062,-255.7734"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="880.5481,-252.4625 869.9586,-252.1265 878.0273,-258.9929 880.5481,-252.4625"/>
</g>
<!-- 26 -->
<g id="node27" class="node">
<title>26</title>
<path fill="none" stroke="#9fd856" stroke-width="2" d="M1305,-401C1305,-401 1025,-401 1025,-401 1019,-401 1013,-395 1013,-389 1013,-389 1013,-377 1013,-377 1013,-371 1019,-365 1025,-365 1025,-365 1305,-365 1305,-365 1311,-365 1317,-371 1317,-377 1317,-377 1317,-389 1317,-389 1317,-395 1311,-401 1305,-401"/>
<text text-anchor="middle" x="1165" y="-386" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1165" y="-375" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
</g>
<!-- 26&#45;&gt;17 -->
<g id="edge41" class="edge">
<title>26&#45;&gt;17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1164.2738,-364.9656C1163.9336,-356.5178 1163.5203,-346.2542 1163.1399,-336.8064"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1166.6295,-336.4776 1162.7299,-326.6265 1159.6352,-336.7593 1166.6295,-336.4776"/>
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<!-- 27 -->
<g id="node28" class="node">
<title>27</title>
<path fill="none" stroke="#d8d356" stroke-width="2" d="M1613.5,-329C1613.5,-329 1512.5,-329 1512.5,-329 1506.5,-329 1500.5,-323 1500.5,-317 1500.5,-317 1500.5,-300 1500.5,-300 1500.5,-294 1506.5,-288 1512.5,-288 1512.5,-288 1613.5,-288 1613.5,-288 1619.5,-288 1625.5,-294 1625.5,-300 1625.5,-300 1625.5,-317 1625.5,-317 1625.5,-323 1619.5,-329 1613.5,-329"/>
<text text-anchor="middle" x="1563" y="-317" font-family="sans" font-size="10.00" fill="#000000">create_index_star</text>
<text text-anchor="middle" x="1563" y="-306" font-family="sans" font-size="10.00" fill="#000000">index_size: 75</text>
<text text-anchor="middle" x="1563" y="-295" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
</g>
<!-- 27&#45;&gt;22 -->
<g id="edge45" class="edge">
<title>27&#45;&gt;22</title>
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<!-- 27&#45;&gt;23 -->
<g id="edge47" class="edge">
<title>27&#45;&gt;23</title>
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