dag_test_workflow.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<text text-anchor="middle" x="162.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="162.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<title>1&#45;&gt;0</title>
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<!-- 2 -->
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<title>2</title>
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<text text-anchor="middle" x="511.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="511.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="840.5" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<text text-anchor="middle" x="1341.5" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;0</title>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<text text-anchor="middle" x="1439.5" y="-303.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
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<text text-anchor="middle" x="1718.5" y="-303.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<text text-anchor="middle" x="1376.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1376.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<!-- 7&#45;&gt;0 -->
<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="817.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="817.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<!-- 8&#45;&gt;0 -->
<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M898.39,-73.35C901.46,-72.87 904.51,-72.42 907.5,-72 1108.54,-43.78 1351.45,-26.97 1443.09,-21.23"/>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="1003.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1003.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<!-- 9&#45;&gt;0 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;0</title>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="1195.5" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="1195.5" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<!-- 10&#45;&gt;0 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;0</title>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
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<text text-anchor="middle" x="1556.5" y="-303.5" font-family="sans" font-size="10.00">star_rpm</text>
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<!-- 11&#45;&gt;0 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;0</title>
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<!-- 26 -->
<g id="node27" class="node">
<title>26</title>
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<text text-anchor="middle" x="1733.5" y="-231.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
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<!-- 11&#45;&gt;26 -->
<g id="edge57" class="edge">
<title>11&#45;&gt;26</title>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="1951.5" y="-303.5" font-family="sans" font-size="10.00">star_rpm</text>
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<!-- 12&#45;&gt;0 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;0</title>
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<!-- 28 -->
<g id="node29" class="node">
<title>28</title>
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<text text-anchor="middle" x="2031.5" y="-231.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
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<!-- 12&#45;&gt;28 -->
<g id="edge59" class="edge">
<title>12&#45;&gt;28</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1971.28,-287.7C1981.25,-278.97 1993.51,-268.24 2004.36,-258.75"/>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<text text-anchor="middle" x="1745.5" y="-159.5" font-family="sans" font-size="10.00">alfa_qc</text>
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<!-- 13&#45;&gt;0 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;0</title>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
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<text text-anchor="middle" x="1756.5" y="-87.5" font-family="sans" font-size="10.00">alfa_qc_all_samples</text>
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<!-- 13&#45;&gt;15 -->
<g id="edge42" class="edge">
<title>13&#45;&gt;15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1748.22,-143.7C1749.43,-135.98 1750.89,-126.71 1752.24,-118.11"/>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
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<text text-anchor="middle" x="1872.5" y="-159.5" font-family="sans" font-size="10.00">alfa_qc</text>
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<!-- 14&#45;&gt;0 -->
<g id="edge14" class="edge">
<title>14&#45;&gt;0</title>
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<!-- 14&#45;&gt;15 -->
<g id="edge43" class="edge">
<title>14&#45;&gt;15</title>
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<!-- 15&#45;&gt;0 -->
<g id="edge15" class="edge">
<title>15&#45;&gt;0</title>
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<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
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<text text-anchor="middle" x="911.5" y="-522" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
</g>
<!-- 16&#45;&gt;3 -->
<g id="edge16" class="edge">
<title>16&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M902.6,-506.22C889.74,-479.63 867.5,-426.73 867.5,-379 867.5,-379 867.5,-379 867.5,-305 867.5,-264.5 856.77,-218.63 848.84,-190.26"/>
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<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
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<text text-anchor="middle" x="1430.5" y="-447.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
</g>
<!-- 16&#45;&gt;19 -->
<g id="edge48" class="edge">
<title>16&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M987.52,-512.88C1086.91,-499 1259.83,-474.84 1357.63,-461.18"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1358.31,-464.62 1367.73,-459.77 1357.34,-457.69 1358.31,-464.62"/>
</g>
<!-- 24 -->
<g id="node25" class="node">
<title>24</title>
<path fill="none" stroke="#88d856" stroke-width="2" d="M1082.5,-180C1082.5,-180 964.5,-180 964.5,-180 958.5,-180 952.5,-174 952.5,-168 952.5,-168 952.5,-156 952.5,-156 952.5,-150 958.5,-144 964.5,-144 964.5,-144 1082.5,-144 1082.5,-144 1088.5,-144 1094.5,-150 1094.5,-156 1094.5,-156 1094.5,-168 1094.5,-168 1094.5,-174 1088.5,-180 1082.5,-180"/>
<text text-anchor="middle" x="1023.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
</g>
<!-- 16&#45;&gt;24 -->
<g id="edge53" class="edge">
<title>16&#45;&gt;24</title>
<path fill="none" stroke="grey" stroke-width="2" d="M911.5,-506.15C911.5,-479.02 911.5,-424.91 911.5,-379 911.5,-379 911.5,-379 911.5,-305 911.5,-264.55 906.62,-248.64 930.5,-216 939.95,-203.08 953.57,-192.86 967.48,-184.97"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="969.43,-187.9 976.63,-180.13 966.15,-181.72 969.43,-187.9"/>
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<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
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<text text-anchor="middle" x="1000.5" y="-231.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
</g>
<!-- 17&#45;&gt;3 -->
<g id="edge17" class="edge">
<title>17&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M961.36,-215.88C939.49,-206.31 912.04,-194.3 888.84,-184.15"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="890.08,-180.87 879.51,-180.07 887.27,-187.28 890.08,-180.87"/>
</g>
<!-- 17&#45;&gt;4 -->
<g id="edge19" class="edge">
<title>17&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1061.04,-217.91C1063.9,-217.25 1066.73,-216.61 1069.5,-216 1128.09,-203.08 1194.15,-190.17 1246.49,-180.33"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1247.25,-183.75 1256.44,-178.46 1245.96,-176.87 1247.25,-183.75"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#566bd8" stroke-width="2" d="M1321.5,-542.5C1321.5,-542.5 1211.5,-542.5 1211.5,-542.5 1205.5,-542.5 1199.5,-536.5 1199.5,-530.5 1199.5,-530.5 1199.5,-518.5 1199.5,-518.5 1199.5,-512.5 1205.5,-506.5 1211.5,-506.5 1211.5,-506.5 1321.5,-506.5 1321.5,-506.5 1327.5,-506.5 1333.5,-512.5 1333.5,-518.5 1333.5,-518.5 1333.5,-530.5 1333.5,-530.5 1333.5,-536.5 1327.5,-542.5 1321.5,-542.5"/>
<text text-anchor="middle" x="1266.5" y="-522" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
</g>
<!-- 18&#45;&gt;4 -->
<g id="edge18" class="edge">
<title>18&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1266.5,-506.15C1266.5,-479.02 1266.5,-424.91 1266.5,-379 1266.5,-379 1266.5,-379 1266.5,-305 1266.5,-259.77 1296.62,-214.85 1318.68,-188"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1321.44,-190.16 1325.23,-180.27 1316.09,-185.64 1321.44,-190.16"/>
</g>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M1877,-468C1877,-468 1794,-468 1794,-468 1788,-468 1782,-462 1782,-456 1782,-456 1782,-444 1782,-444 1782,-438 1788,-432 1794,-432 1794,-432 1877,-432 1877,-432 1883,-432 1889,-438 1889,-444 1889,-444 1889,-456 1889,-456 1889,-462 1883,-468 1877,-468"/>
<text text-anchor="middle" x="1835.5" y="-447.5" font-family="sans" font-size="10.00">map_genome_star</text>
</g>
<!-- 18&#45;&gt;22 -->
<g id="edge51" class="edge">
<title>18&#45;&gt;22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1333.73,-514.93C1444.4,-500.83 1663.5,-472.92 1771.81,-459.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1772.46,-462.56 1781.94,-457.82 1771.58,-455.62 1772.46,-462.56"/>
</g>
<!-- 25 -->
<g id="node26" class="node">
<title>25</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M1226,-180C1226,-180 1125,-180 1125,-180 1119,-180 1113,-174 1113,-168 1113,-168 1113,-156 1113,-156 1113,-150 1119,-144 1125,-144 1125,-144 1226,-144 1226,-144 1232,-144 1238,-150 1238,-156 1238,-156 1238,-168 1238,-168 1238,-174 1232,-180 1226,-180"/>
<text text-anchor="middle" x="1175.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
</g>
<!-- 18&#45;&gt;25 -->
<g id="edge55" class="edge">
<title>18&#45;&gt;25</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1258.81,-506.09C1247.71,-479.33 1228.5,-426.21 1228.5,-379 1228.5,-379 1228.5,-379 1228.5,-305 1228.5,-264.46 1223.88,-253.51 1208.5,-216 1204.7,-206.72 1199.33,-197.22 1194.03,-188.88"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1196.82,-186.75 1188.38,-180.34 1190.98,-190.62 1196.82,-186.75"/>
</g>
<!-- 19&#45;&gt;5 -->
<g id="edge20" class="edge">
<title>19&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1368.25,-431.95C1350.75,-423.98 1333.72,-412.47 1323.5,-396 1315.06,-382.41 1314.85,-373.46 1323.5,-360 1334.35,-343.11 1352.07,-331.53 1370.43,-323.63"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1371.76,-326.87 1379.76,-319.93 1369.18,-320.36 1371.76,-326.87"/>
</g>
<!-- 19&#45;&gt;11 -->
<g id="edge34" class="edge">
<title>19&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1487.66,-431.93C1506.05,-423.8 1524.91,-412.21 1537.5,-396 1551.1,-378.5 1555.5,-353.46 1556.7,-334.4"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1560.2,-334.36 1557.08,-324.24 1553.21,-334.1 1560.2,-334.36"/>
</g>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#56d8d0" stroke-width="2" d="M1516.5,-396C1516.5,-396 1344.5,-396 1344.5,-396 1338.5,-396 1332.5,-390 1332.5,-384 1332.5,-384 1332.5,-372 1332.5,-372 1332.5,-366 1338.5,-360 1344.5,-360 1344.5,-360 1516.5,-360 1516.5,-360 1522.5,-360 1528.5,-366 1528.5,-372 1528.5,-372 1528.5,-384 1528.5,-384 1528.5,-390 1522.5,-396 1516.5,-396"/>
<text text-anchor="middle" x="1430.5" y="-381" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1430.5" y="-370" font-family="sans" font-size="10.00">seqmode: paired_end</text>
</g>
<!-- 19&#45;&gt;20 -->
<g id="edge49" class="edge">
<title>19&#45;&gt;20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1430.5,-431.7C1430.5,-423.98 1430.5,-414.71 1430.5,-406.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1434,-406.1 1430.5,-396.1 1427,-406.1 1434,-406.1"/>
</g>
<!-- 20&#45;&gt;5 -->
<g id="edge21" class="edge">
<title>20&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1432.72,-359.7C1433.72,-351.98 1434.91,-342.71 1436.01,-334.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1439.5,-334.47 1437.3,-324.1 1432.55,-333.58 1439.5,-334.47"/>
</g>
<!-- 20&#45;&gt;11 -->
<g id="edge35" class="edge">
<title>20&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1461.32,-359.88C1478.2,-350.5 1499.28,-338.79 1517.32,-328.77"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1519.39,-331.62 1526.43,-323.71 1515.99,-325.5 1519.39,-331.62"/>
</g>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M1732.5,-396C1732.5,-396 1596.5,-396 1596.5,-396 1590.5,-396 1584.5,-390 1584.5,-384 1584.5,-384 1584.5,-372 1584.5,-372 1584.5,-366 1590.5,-360 1596.5,-360 1596.5,-360 1732.5,-360 1732.5,-360 1738.5,-360 1744.5,-366 1744.5,-372 1744.5,-372 1744.5,-384 1744.5,-384 1744.5,-390 1738.5,-396 1732.5,-396"/>
<text text-anchor="middle" x="1664.5" y="-375.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
</g>
<!-- 21&#45;&gt;5 -->
<g id="edge22" class="edge">
<title>21&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1609.75,-359.97C1577.9,-350.06 1537.58,-337.51 1504.17,-327.12"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1505.09,-323.74 1494.5,-324.11 1503.01,-330.42 1505.09,-323.74"/>
</g>
<!-- 21&#45;&gt;6 -->
<g id="edge25" class="edge">
<title>21&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1677.85,-359.7C1684.26,-351.39 1692.06,-341.28 1699.11,-332.14"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1701.97,-334.16 1705.31,-324.1 1696.43,-329.88 1701.97,-334.16"/>
</g>
<!-- 22&#45;&gt;6 -->
<g id="edge23" class="edge">
<title>22&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1821.21,-431.84C1812.59,-421.47 1801.4,-407.99 1791.5,-396 1773.79,-374.54 1753.76,-350.1 1739.16,-332.27"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1741.51,-329.61 1732.46,-324.09 1736.09,-334.04 1741.51,-329.61"/>
</g>
<!-- 22&#45;&gt;12 -->
<g id="edge36" class="edge">
<title>22&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1889.09,-448.07C1928.28,-444.23 1979.03,-431.98 2005.5,-396 2020.98,-374.96 2001.77,-349.31 1982.1,-330.96"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1984.41,-328.33 1974.61,-324.31 1979.77,-333.57 1984.41,-328.33"/>
</g>
<!-- 23 -->
<g id="node24" class="node">
<title>23</title>
<path fill="none" stroke="#56d8d0" stroke-width="2" d="M1984.5,-396C1984.5,-396 1812.5,-396 1812.5,-396 1806.5,-396 1800.5,-390 1800.5,-384 1800.5,-384 1800.5,-372 1800.5,-372 1800.5,-366 1806.5,-360 1812.5,-360 1812.5,-360 1984.5,-360 1984.5,-360 1990.5,-360 1996.5,-366 1996.5,-372 1996.5,-372 1996.5,-384 1996.5,-384 1996.5,-390 1990.5,-396 1984.5,-396"/>
<text text-anchor="middle" x="1898.5" y="-381" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1898.5" y="-370" font-family="sans" font-size="10.00">seqmode: single_end</text>
</g>
<!-- 22&#45;&gt;23 -->
<g id="edge52" class="edge">
<title>22&#45;&gt;23</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1851.07,-431.7C1858.7,-423.22 1868.02,-412.86 1876.38,-403.58"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1879.02,-405.88 1883.11,-396.1 1873.81,-401.2 1879.02,-405.88"/>
</g>
<!-- 23&#45;&gt;6 -->
<g id="edge24" class="edge">
<title>23&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1854.47,-359.88C1829.53,-350.18 1798.16,-337.98 1771.84,-327.74"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1772.98,-324.43 1762.39,-324.07 1770.44,-330.95 1772.98,-324.43"/>
</g>
<!-- 23&#45;&gt;12 -->
<g id="edge37" class="edge">
<title>23&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1911.6,-359.7C1917.89,-351.39 1925.55,-341.28 1932.46,-332.14"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1935.3,-334.19 1938.55,-324.1 1929.72,-329.96 1935.3,-334.19"/>
</g>
<!-- 24&#45;&gt;7 -->
<g id="edge26" class="edge">
<title>24&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1094.58,-145.82C1097.6,-145.2 1100.58,-144.59 1103.5,-144 1183.8,-127.78 1206.36,-124.57 1290.09,-108.27"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1290.91,-111.67 1300.05,-106.32 1289.56,-104.8 1290.91,-111.67"/>
</g>
<!-- 24&#45;&gt;8 -->
<g id="edge28" class="edge">
<title>24&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M973.37,-143.97C944.46,-134.14 907.93,-121.73 877.5,-111.39"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="878.45,-108.01 867.85,-108.11 876.2,-114.64 878.45,-108.01"/>
</g>
<!-- 24&#45;&gt;9 -->
<g id="edge30" class="edge">
<title>24&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1018.56,-143.7C1016.33,-135.9 1013.65,-126.51 1011.17,-117.83"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1014.5,-116.76 1008.39,-108.1 1007.77,-118.68 1014.5,-116.76"/>
</g>
<!-- 24&#45;&gt;10 -->
<g id="edge32" class="edge">
<title>24&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1065.58,-143.88C1089.3,-134.22 1119.12,-122.09 1144.2,-111.88"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1145.62,-115.08 1153.56,-108.07 1142.98,-108.6 1145.62,-115.08"/>
</g>
<!-- 25&#45;&gt;7 -->
<g id="edge27" class="edge">
<title>25&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1224.41,-143.97C1252.5,-134.19 1287.96,-121.84 1317.57,-111.52"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1319.07,-114.71 1327.37,-108.11 1316.77,-108.09 1319.07,-114.71"/>
</g>
<!-- 25&#45;&gt;8 -->
<g id="edge29" class="edge">
<title>25&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1112.71,-145.98C1109.6,-145.3 1106.52,-144.63 1103.5,-144 1019.87,-126.46 996.21,-124.35 908.32,-108.14"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="908.92,-104.69 898.45,-106.31 907.64,-111.57 908.92,-104.69"/>
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<!-- 25&#45;&gt;9 -->
<g id="edge31" class="edge">
<title>25&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1133.42,-143.88C1109.7,-134.22 1079.88,-122.09 1054.8,-111.88"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1056.02,-108.6 1045.44,-108.07 1053.38,-115.08 1056.02,-108.6"/>
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<!-- 25&#45;&gt;10 -->
<g id="edge33" class="edge">
<title>25&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1180.44,-143.7C1182.67,-135.9 1185.35,-126.51 1187.83,-117.83"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1191.23,-118.68 1190.61,-108.1 1184.5,-116.76 1191.23,-118.68"/>
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<!-- 26&#45;&gt;13 -->
<g id="edge38" class="edge">
<title>26&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1736.47,-215.7C1737.79,-207.98 1739.38,-198.71 1740.85,-190.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1744.33,-190.55 1742.57,-180.1 1737.43,-189.37 1744.33,-190.55"/>
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<!-- 27 -->
<g id="node28" class="node">
<title>27</title>
<path fill="none" stroke="#bed856" stroke-width="2" d="M1928.5,-252C1928.5,-252 1836.5,-252 1836.5,-252 1830.5,-252 1824.5,-246 1824.5,-240 1824.5,-240 1824.5,-228 1824.5,-228 1824.5,-222 1830.5,-216 1836.5,-216 1836.5,-216 1928.5,-216 1928.5,-216 1934.5,-216 1940.5,-222 1940.5,-228 1940.5,-228 1940.5,-240 1940.5,-240 1940.5,-246 1934.5,-252 1928.5,-252"/>
<text text-anchor="middle" x="1882.5" y="-231.5" font-family="sans" font-size="10.00">generate_alfa_index</text>
</g>
<!-- 27&#45;&gt;13 -->
<g id="edge39" class="edge">
<title>27&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1848.99,-215.88C1828.65,-205.49 1802.7,-192.22 1781.87,-181.58"/>
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<!-- 27&#45;&gt;14 -->
<g id="edge41" class="edge">
<title>27&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1880.03,-215.7C1878.93,-207.98 1877.6,-198.71 1876.37,-190.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1879.82,-189.51 1874.94,-180.1 1872.89,-190.5 1879.82,-189.51"/>
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<!-- 28&#45;&gt;14 -->
<g id="edge40" class="edge">
<title>28&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1992.6,-215.88C1967.01,-204.61 1933.73,-189.96 1908.7,-178.94"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1910.1,-175.73 1899.54,-174.9 1907.28,-182.14 1910.1,-175.73"/>
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<!-- 29 -->
<g id="node30" class="node">
<title>29</title>
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<text text-anchor="middle" x="911.5" y="-602" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="911.5" y="-591" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<title>29&#45;&gt;16</title>
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<title>30</title>
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<text text-anchor="middle" x="1070.5" y="-309" font-family="sans" font-size="10.00">extract_transcriptome</text>
<text text-anchor="middle" x="1070.5" y="-298" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 30&#45;&gt;17 -->
<g id="edge45" class="edge">
<title>30&#45;&gt;17</title>
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<title>33</title>
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<text text-anchor="middle" x="1139.5" y="-237" font-family="sans" font-size="10.00">create_index_salmon</text>
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<!-- 30&#45;&gt;33 -->
<g id="edge60" class="edge">
<title>30&#45;&gt;33</title>
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<title>31</title>
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<text text-anchor="middle" x="1266.5" y="-591" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 31&#45;&gt;18 -->
<g id="edge46" class="edge">
<title>31&#45;&gt;18</title>
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<!-- 32 -->
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<title>32</title>
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<text text-anchor="middle" x="1835.5" y="-522" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1835.5" y="-511" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 32&#45;&gt;19 -->
<g id="edge47" class="edge">
<title>32&#45;&gt;19</title>
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<g id="edge50" class="edge">
<title>32&#45;&gt;22</title>
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<!-- 32&#45;&gt;27 -->
<g id="edge58" class="edge">
<title>32&#45;&gt;27</title>
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<!-- 33&#45;&gt;24 -->
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<title>33&#45;&gt;24</title>
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<g id="edge56" class="edge">
<title>33&#45;&gt;25</title>
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