test inserting logo in readme

README.md

-# ZARP
+> ![zarp_logo][zarp-logo]
+
+**ZARP** ([Zavolan-Lab][zavolan-lab] Automated RNA-Seq Pipeline) is a generic RNA-Seq analysis pipeline that allows users to process and analyze Illumina short-read sequencing libraries with minimum effort. The pipeline relies on publicly available bioinformatics tools and currently handles single or paired-end stranded bulk RNA-seq data. The workflow is developed in [Snakemake][snakemake], a widely used workflow management system in the bioinformatics community.
+
+
+
+Currently ZARP supports:
+- adapter-trimming
+- read alignment
+- genome / transcriptome quantification
+- principal component analysis of all the samples included in the analysis
+- topology analysis
+
 
 [Snakemake][snakemake] workflow that covers common steps of short read RNA-Seq 
 library analysis developed by the [Zavolan lab][zavolan-lab].

images/zarp_logo.svg

+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!-- Created with Inkscape (http://www.inkscape.org/) -->
+
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   width="56.26725mm"
+   height="48.036488mm"
+   viewBox="0 0 199.37215 170.20803"
+   id="svg4261"
+   version="1.1"
+   inkscape:version="0.91 r13725"
+   sodipodi:docname="zarp_1.svg">
+  <defs
+     id="defs4263" />
+  <sodipodi:namedview
+     id="base"
+     pagecolor="#ffffff"
+     bordercolor="#666666"
+     borderopacity="1.0"
+     inkscape:pageopacity="0"
+     inkscape:pageshadow="2"
+     inkscape:zoom="1.979899"
+     inkscape:cx="-20.897608"
+     inkscape:cy="8.0923225"
+     inkscape:document-units="px"
+     inkscape:current-layer="layer1"
+     showgrid="false"
+     fit-margin-top="2"
+     fit-margin-left="2"
+     fit-margin-right="2"
+     fit-margin-bottom="2"
+     inkscape:window-width="1920"
+     inkscape:window-height="1056"
+     inkscape:window-x="0"
+     inkscape:window-y="24"
+     inkscape:window-maximized="1" />
+  <metadata
+     id="metadata4266">
+    <rdf:RDF>
+      <cc:Work
+         rdf:about="">
+        <dc:format>image/svg+xml</dc:format>
+        <dc:type
+           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+        <dc:title></dc:title>
+      </cc:Work>
+    </rdf:RDF>
+  </metadata>
+  <g
+     inkscape:label="Layer 1"
+     inkscape:groupmode="layer"
+     id="layer1"
+     transform="translate(-143.17107,-38.686762)">
+    <path
+       style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:70px;line-height:100%;font-family:Laksaman;-inkscape-font-specification:'Laksaman, Bold';text-align:center;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;text-anchor:middle;fill:#e5ff80;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-width:0.99999988px;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
+       d="m 243.57805,88.696175 4.26256,-42.817231 9.23941,42.774121 27.72509,-33.056461 -13.42567,56.419606 63.97528,13.31515 -55.4256,5.63049 13.41883,14.07622 -35.29737,-10.00975 2.62545,46.29513 -21.58683,-30.34208 -9.33482,50.67438 -14.42343,-45.05975 -63.46414,14.09207 41.42335,-40.35184 -32.50423,-14.98737 41.31563,-10.16393 -6.52137,-34.918195 24.81619,26.68928 8.48284,-37.93928 z"
+       id="path4227"
+       inkscape:connector-curvature="0"
+       sodipodi:nodetypes="ccccccccccccccccccccc" />
+    <path
+       d="m 233.52739,151.64498 -36.82867,20.19032 -4.34714,-6.07217 8.88857,-44.66529 -18.75483,15.37297 -8.11745,-7.10713 34.18337,-24.0349 2.6618,6.34119 -6.60331,47.12207 21.66058,-15.94774 z"
+       id="path4219"
+       inkscape:connector-curvature="0"
+       sodipodi:nodetypes="ccccccccccc"
+       style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:70px;line-height:100%;font-family:Laksaman;-inkscape-font-specification:'Laksaman, Bold';text-align:center;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;text-anchor:middle;fill:#00aad4;fill-opacity:1;stroke:#000000;stroke-width:1.77165365;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1" />
+    <path
+       d="m 251.57333,139.84191 -6.23388,7.90103 -6.52448,-19.20392 -15.51878,2.39211 -0.56383,20.5798 -8.03645,-5.98464 6.16552,-42.44714 9.51639,-1.60852 z m -15.38208,-15.39566 -9.00772,-16.1482 -2.67194,17.94854 z"
+       style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:70px;line-height:100%;font-family:Laksaman;-inkscape-font-specification:'Laksaman, Bold';text-align:center;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;text-anchor:middle;fill:#00aad4;fill-opacity:1;stroke:#000000;stroke-width:1.77165377;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
+       id="path4221"
+       inkscape:connector-curvature="0"
+       sodipodi:nodetypes="ccccccccccccc" />
+    <path
+       d="m 253.71902,93.936195 c 4.28794,-0.17115 7.84842,0.555 10.68149,2.17841 2.86857,1.58862 4.31255,4.035545 4.33187,7.340785 0.024,4.10654 -2.06683,7.16206 -6.27258,9.16659 2.36696,1.37488 4.04026,3.31175 5.0199,5.8106 0.97962,2.49886 1.75442,8.63598 2.56944,13.54579 l -7.57779,-3.91442 c -1.52577,-10.32469 -2.28878,-13.69806 -7.50577,-13.48984 l -3.69875,-0.10794 -0.87052,14.84643 -7.26172,3.35664 0.19202,-37.316425 c 3.96245,-0.82604 7.42658,-1.29825 10.39241,-1.41662 z M 263.803,103.95269 c -0.0244,-4.173295 -3.37763,-6.126585 -10.05967,-5.859895 -2.00103,0.0799 -3.76933,0.23393 -5.30486,0.46219 l 2.11632,11.087925 4.57821,0.0728 c 6.06575,0.0965 8.69461,-1.55637 8.67,-5.76305 z"
+       style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:70px;line-height:100%;font-family:Laksaman;-inkscape-font-specification:'Laksaman, Bold';text-align:center;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;text-anchor:middle;fill:#00aad4;fill-opacity:1;stroke:#000000;stroke-width:1.77165365;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
+       id="path4223"
+       inkscape:connector-curvature="0"
+       sodipodi:nodetypes="scscsccsccccsssccss" />
+    <path
+       d="m 287.31989,95.035445 c 3.33232,0.73811 5.88925,2.26024 7.67077,4.5664 1.81603,2.279665 2.35289,5.095225 1.61054,8.446685 -0.7928,3.57923 -5.05204,6.72224 -5.05204,6.72224 -2.81597,1.45848 -3.44969,2.22861 -7.40288,2.39792 -0.84688,0.0363 -4.05394,-0.3302 -5.24704,-0.76514 l -2.399,13.30577 -5.85632,-0.90533 8.64507,-34.574535 c 3.25075,0.0715 5.92772,0.34013 8.0309,0.80599 z m 5.33499,12.394995 c 0.9874,-4.45777 -2.21202,-6.1985 -4.93709,-7.455185 -1.43225,-0.6605 -4.16678,-1.50776 -5.26087,-1.61356 l -2.50604,12.303985 c 1.32815,0.60139 3.42622,1.21973 3.42622,1.21973 3.66289,0.26727 8.23273,0.2631 9.27778,-4.45497 z"
+       style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:70px;line-height:100%;font-family:Laksaman;-inkscape-font-specification:'Laksaman, Bold';text-align:center;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;text-anchor:middle;fill:#00aad4;fill-opacity:1;stroke:#000000;stroke-width:1.77165353;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
+       id="path4225"
+       inkscape:connector-curvature="0"
+       sodipodi:nodetypes="scscsccccsssccss" />
+  </g>
+</svg>