use --notemp for CI tests

tests/test_alfa/test.sh

@@ -33,6 +33,7 @@ snakemake \
     --use-singularity \
     --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \
     --verbose \
+    --notemp \
     results/ALFA/ALFA_plots_mqc.png
 
 # Check md5 sum of some output files

tests/test_create_dag_image/test.sh

@@ -26,5 +26,6 @@ snakemake \
     --printshellcmds \
     --dryrun \
     --verbose \
+    --notemp \
     | dot -Tsvg > "../../images/dag_test_workflow.svg"
 

tests/test_create_rule_graph/test.sh

@@ -26,5 +26,6 @@ snakemake \
     --printshellcmds \
     --dryrun \
     --verbose \
+    --notemp \
     | dot -Tsvg > "../../images/rule_graph.svg"
 

tests/test_integration_workflow/test.local.sh

@@ -33,6 +33,7 @@ snakemake \
     --rerun-incomplete \
     --use-singularity \
     --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \
+    --notemp \
     --verbose
 
 # Create a Snakemake report after the workflow execution

tests/test_integration_workflow/test.slurm.sh

@@ -35,6 +35,7 @@ snakemake \
     --rerun-incomplete \
     --use-singularity \
     --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \
+    --notemp \
     --verbose
 
 # Create a Snakemake report after the workflow execution

tests/test_integration_workflow_multiple_lanes/test.local.sh

@@ -33,6 +33,7 @@ snakemake \
     --rerun-incomplete \
     --use-singularity \
     --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \
+    --notemp \
     --verbose
 
 # Create a Snakemake report after the workflow execution

tests/test_integration_workflow_multiple_lanes/test.slurm.sh

@@ -35,6 +35,7 @@ snakemake \
     --rerun-incomplete \
     --use-singularity \
     --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \
+    --notemp \
     --verbose
 
 # Create a Snakemake report after the workflow execution