Merge branch 'master' of...

.gitlab-ci.yml

README.md

Snakefile

images/dag_test_workflow.svg

images/logo.128px.png

images/rule_graph.svg

install/environment.dev.yml

install/environment.root.yml

install/environment.yml

pipeline_documentation.md

tests/test_alfa/test.sh

tests/test_integration_workflow/expected_output.files

tests/test_integration_workflow/expected_output.md5

tests/test_integration_workflow/test.local.sh

tests/test_integration_workflow/test.slurm.sh

workflow/rules/paired_end.snakefile.smk

workflow/rules/single_end.snakefile.smk