Polya trimming correction
Closes issue #98 (closed) Modified the samples.tsv to include poly-a for the 3p and 5p to match the cutadapt options -a -g -A -G. Empty variables are substituted by 'XXXXXXXXXX' so that they are not trimmed by cutadapt.
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changed milestone to %v0.1.0 release
added Bug label
Hi @katsanto, just one issue before I can merge: given that the input "API" (i.e., the sample table) changed, doesn't this require changes in the documentation, too? If so, please update the docs first (
README.md
andpipeline_documentation.md
), as we don't want docs and code base to diverge. Thanks :)@katsanto Maria, could you be so nice as to correct the link for STAR manual, if you're editing the documentation anyways? The link in the description of
create_index_star
is wrong, whereas the one inmap_genome_star
is correct. Thanks a lot, I don't want to open an extra issue for that.
added 6 commits
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ac26fff7...27f4fa5b - 4 commits from branch
master
- 78fccac8 - Merge branch 'master' of...
- 94d8234b - Fixed incompatibility of md5s with the multiqc merge
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ac26fff7...27f4fa5b - 4 commits from branch
mentioned in commit 05e5a95a
@herrmchr: I think your broken link wasn't addressed, so perhaps better to open an issue for it or fix it quickly.