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zavolan_group
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ZARP
Commits
7c74291b
Commit
7c74291b
authored
4 years ago
by
BIOPZ-Gypas Foivos
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Set STAR multimapper parameter `--outFilterMultimapScoreRange` to `0`
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3a9ec893
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2 merge requests
!76
Bump version to v0.2.0
,
!66
Set STAR multimapper parameter
Pipeline
#10993
passed
4 years ago
Stage: test
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workflow/rules/paired_end.snakefile.smk
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workflow/rules/paired_end.snakefile.smk
workflow/rules/single_end.snakefile.smk
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workflow/rules/single_end.snakefile.smk
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workflow/rules/paired_end.snakefile.smk
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7c74291b
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@@ -228,7 +228,7 @@ rule pe_map_genome_star:
--readFilesCommand zcat \
--outSAMunmapped None \
--outFilterMultimapNmax {params.multimappers} \
--outFilterMultimapScoreRange
1
\
--outFilterMultimapScoreRange
0
\
--outFileNamePrefix {params.outFileNamePrefix} \
--outSAMattributes All \
--outStd BAM_SortedByCoordinate \
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workflow/rules/single_end.snakefile.smk
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7c74291b
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@@ -182,7 +182,7 @@ rule map_genome_star:
--readFilesCommand zcat \
--outSAMunmapped None \
--outFilterMultimapNmax {params.multimappers} \
--outFilterMultimapScoreRange
1
\
--outFilterMultimapScoreRange
0
\
--outFileNamePrefix {params.outFileNamePrefix} \
--outSAMattributes All \
--outStd BAM_SortedByCoordinate \
...
...
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