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Commit 84fee831 authored by Dominik Burri's avatar Dominik Burri
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orientation readout corrected

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...@@ -323,7 +323,7 @@ rule calculate_TIN_scores: ...@@ -323,7 +323,7 @@ rule calculate_TIN_scores:
### ALFA: Annotation Landscape For Aligned reads ### ALFA: Annotation Landscape For Aligned reads
################################################################################# #################################################################################
directionality = {"--fr": "fr-firststrand", "--rv": "fr-secondstrand"} directionality = {"--fr": "fr-firststrand", "--rf": "fr-secondstrand"}
rename_files = {"fr-firststrand": ("Signal.UniqueMultiple.out.plus.bg", rename_files = {"fr-firststrand": ("Signal.UniqueMultiple.out.plus.bg",
"Signal.UniqueMultiple.out.minus.bg"), "Signal.UniqueMultiple.out.minus.bg"),
"fr-secondstrand": ("Signal.UniqueMultiple.out.minus.bg", "fr-secondstrand": ("Signal.UniqueMultiple.out.minus.bg",
......
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